Browse Element(s) Details


Os.47929.1.S1_at

Description gb:AK099705.1
DB_XREF= gi:32984914
TID=Os.47929.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075K02, full insert sequence.
FL= gb:AK099705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3220011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47929.1.S1_at--933--4771Chr09:19218845..19218869 (25 bp)
GCTGCCTGAAGGTGATGCCCAATTC
LOC_Os09g32200
Os.47929.1.S1_at--29--4391Chr09:19218863..19218887 (25 bp)
CCAATTCCGGCATCACCTGGATGTT
LOC_Os09g32200
Os.47929.1.S1_at--841--1751Chr09:19218877..19218901 (25 bp)
ACCTGGATGTTCTACGAGGCCTGTA
LOC_Os09g32200
Os.47929.1.S1_at--667--6211Chr09:19218892..19218916 (25 bp)
GAGGCCTGTAAGGACATCCTTTTGG
LOC_Os09g32200
Os.47929.1.S1_at--156--791Chr09:19218948..19218972 (25 bp)
ATGTGGCATCGAGCAACTGCAACCT
LOC_Os09g32200
Os.47929.1.S1_at--842--1971Chr09:19218963..19218987 (25 bp)
ACTGCAACCTGACGCATTGCATATT
LOC_Os09g32200
Os.47929.1.S1_at--273--8811Chr09:19219041..19219065 (25 bp)
TGATCTTTTCCCAGTTTTCGAGTCC
LOC_Os09g32200
Os.47929.1.S1_at--131--10371Chr09:19219055..19219079 (25 bp)
TTTTCGAGTCCCACCCTGGATGACG
LOC_Os09g32200
Os.47929.1.S1_at--261--4871Chr09:19219091..19219115 (25 bp)
GCTAGATAGGAGACGCTGTTCTTTT
LOC_Os09g32200
Os.47929.1.S1_at--41--5011Chr09:19219137..19219161 (25 bp)
GCATGTGTTGTTTCTCGCTAATTTG
LOC_Os09g32200
Os.47929.1.S1_at--55--2291Chr09:19219227..19219251 (25 bp)
AAATGTTGGCATGTACCTCTACCTG
LOC_Os09g32200
Target Sequence 
GCTGCCTGAAGGTGATGCCCAATTCCGGCATCACCTGGATGTTCTACGAGGCCTGTAAGGACATCCTTTTGGCGGNCAAG
GACAAGCGCAAAGCTTAAGGGGAATGTGGCATCGAGCAACTGCAACCTGACGCATTGCATATTTGCAACGTAGAAAACAA
TAATGAGTTACAAGATTCTTGTATCGGTGGGATNCCTGATCTTTTCCCAGTTTTCGAGTCCCACCCTGGATGACGCCGAA
AAAGTGGCTAGATAGGAGACGCTGTTCTTTTTTTTGGCTGGTGGCTGGGAGAGCATGTGTTGTTTCTCGCTAATTTGGNA
TGCCTGATTAATTACATGTTGTCTAAGTGTTAACCGTGGGGTTTACACACGAGAATGGCTGAAAATGTTGGCATGTACCT
CTACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis