Browse Element(s) Details


Os.47953.1.S1_at

Description gb:AK067476.1
DB_XREF= gi:32977494
TID=Os.47953.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107O15, full insert sequence.
FL= gb:AK067476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4313011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed
LOC_Os01g43150Os.51057.1.S1_s_at11/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150Os.51057.1.S1_at10/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43160Os.15014.1.S1_at11/111+24956118..24959175glycoside hydrolase family 28 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47953.1.S1_at--6--4291Chr01:24931914..24931938 (25 bp)
CCATACCCAAACTCATTCTTCGAAA
LOC_Os01g43130
Os.47953.1.S1_at--654--731Chr01:24931953..24931977 (25 bp)
ATGTTCCTGGGCTGCGATCTGTGTA
LOC_Os01g43130
Os.47953.1.S1_at--575--4051Chr01:24931967..24931991 (25 bp)
CGATCTGTGTAACCCTTGTGCTGAA
LOC_Os01g43130
Os.47953.1.S1_at--469--9791Chr01:24932038..24932062 (25 bp)
TAAGATGACTGCTGCATCCTTTTTT
LOC_Os01g43130
Os.47953.1.S1_at--743--10751Chr01:24932075..24932099 (25 bp)
TTGACCAATCTATTATCACCACCGG
LOC_Os01g43130
Os.47953.1.S1_at--132--1711Chr01:24932092..24932116 (25 bp)
ACCACCGGGCAGGTTCAAAGCTGAA
LOC_Os01g43130
Os.47953.1.S1_at--880--6631Chr01:24932163..24932187 (25 bp)
GTTGTACTGACCTACATCATGTGGG
LOC_Os01g43130
Os.47953.1.S1_at--658--10371Chr01:24932195..24932219 (25 bp)
TTTTTTCCTTCACCATAACTACACT
LOC_Os01g43130
Os.47953.1.S1_at--309--4371Chr01:24932225..24932249 (25 bp)
CCAAGTCCTCCCGAGTATGGAAAAT
LOC_Os01g43130
Os.47953.1.S1_at--451--3011Chr01:24932247..24932271 (25 bp)
AATGAAATGTACCTGTTCTTGCGGC
LOC_Os01g43130
Os.47953.1.S1_at--470--2771Chr01:24932277..24932301 (25 bp)
AAGACGCCACACCACATAAGCAGTG
LOC_Os01g43130
Target Sequence 
CCATACCCAAACTCATTCTTCGAAAAATGGGCCTTAACAATGTTCCTGGGCTGCGATCTGTGTAACCCTTGTGCTGAAGG
TTGACAATTTTTTTACTGCCCCCCAAGTTTGACAACCTCAGTTCTAAGATGACTGCTGCATCCTTTTTTTGAAGCCAGCT
CTTGACCAATCTATTATCACCACCGGGCAGGTTCAAAGCTGAAATGAACCCAGTGATCCTTCATATAGGAGTAACTNTTT
TTTTTCACAGTTGTACTGACCTACATCATGTGGGAGCATATTTTTTTCCTTCACCATAACTACACTGGGCCCCAAGTCCT
CCCGAGTATGGAAAATGAAATGTACCTGTTCTTGCGGCGCCACAAGACGCCACACCACATAAGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis