Browse Element(s) Details


Os.47954.1.S1_at

Description gb:AK067236.1
DB_XREF= gi:32977254
TID=Os.47954.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095H11, full insert sequence.
FL= gb:AK062173.1 gb:AK067236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4084011/11microtubule associated protein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40790OsAffx.28028.1.S1_x_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40790OsAffx.28028.1.S1_at10/116+24331456..24337115Mlo family protein
LOC_Os06g40800OsAffx.15865.1.S1_at11/116+24340756..24341322hypothetical protein
LOC_Os06g40809Os.51592.1.S1_at11/116+24342914..24343459expressed protein
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein
LOC_Os06g40880Os.49993.1.S1_at9/116+24378830..24381171Polygalacturonase family protein, expressed
LOC_Os06g40890Os.53450.1.S1_at11/116+24383028..24385067Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900NANA6+24385490..24387005retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910Os.41883.1.S1_at1/116+24387284..24387874Cytidine and deoxycytidylate deaminase zinc-binding region family protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009536cellular_componentplastid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47954.1.S1_at--610--5351Chr06:24362128..24362152 (25 bp)
GAAGATAAACGACCAGCTAGCTGCA
LOC_Os06g40840
Os.47954.1.S1_at--252--971Chr06:24362157..24362181 (25 bp)
AGGAGAAGCTCTTCGGCTCGAAACC
LOC_Os06g40840
Os.47954.1.S1_at--902--3031Chr06:24362199..24362223 (25 bp)
AATCCTCAAGGAAGGCGCCTGGCCC
LOC_Os06g40840
Os.47954.1.S1_at--502--2571Chr06:24362231..24362255 (25 bp)
AACGGTGGCGCAGTCAATGGCACAC
LOC_Os06g40840
Os.47954.1.S1_at--1093--1151Chr06:24362242..24362266 (25 bp)
AGTCAATGGCACACCGAACCGGAGG
LOC_Os06g40840
Os.47954.1.S1_at--816--5471Chr06:24362347..24362371 (25 bp)
GAACTACGTCGCCATCTGCAAGGAA
LOC_Os06g40840
Os.47954.1.S1_at--802--3791Chr06:24362419..24362443 (25 bp)
CTCGCCATGATTGACCGTACATTTC
LOC_Os06g40840
Os.47954.1.S1_at--1150--2071Chr06:24362437..24362461 (25 bp)
ACATTTCTTGGTGCCAGTGGTAGAG
LOC_Os06g40840
Os.47954.1.S1_at--611--1991Chr06:24362466..24362490 (25 bp)
ACTCCATATCTGTGCAGTAGCAGGA
LOC_Os06g40840
Os.47954.1.S1_at--420--3052Chr06:24362567..24362591 (25 bp)
AATCGATTTGTTGCTGTCCATTTGC
LOC_Os06g40840
Os.47954.1.S1_at--532--5411Chr06:24362647..24362671 (25 bp)
GAAGCTGAGCTCATGTCGTCGTGTC
LOC_Os06g40840
Target Sequence 
GAAGATAAACGACCAGCTAGCTGCAGAGCAGGAGAAGCTCTTCGGCTCGAAACCGAGCCCAGCCCGGCCCCAATCCTCAA
GGAAGGCGCCTGGCCCGCGGGCCAACGGTGGCGCAGTCAATGGCACACCGAACCGGAGGCTCTCGGCCCACCAGAACGGC
GGCGGCAGGTCGGTGAGCCGGGACGGGCGGAGGGACAGTGGCCGGCCGGCTGCTCCGGTGAACTACGTCGCCATCTGCAA
GGAAGAGTCCAGCAACAACAACCCGGCGGCGTCCTCCCCCTGACGATCATCCTCGCCATGATTGACCGTACATTTCTTGG
TGCCAGTGGTAGAGAGATACTCCATATCTGTGCAGTAGCAGGAAAAAAAGAAAAACTATAGCAAGATACTAGTAGGACAA
GTGATNCGAATGATAGTAGCAGTATTTTGGCTGTATTTGAATCGATTTGTTGCTGTCCATTTGCTGGTAGTGGATCGAAT
GGATCGAGTGGGTGCAGCCGTGCAGGTGCATCCGCCATGGAAGCTGAGCTCATGTCGTCGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis