Browse Element(s) Details


Os.48008.1.S1_x_at

Description gb:NM_189834.1
DB_XREF= gi:34906751
GEN=P0552F09.29
TID=Os.48008.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU056950(S21011)~similar to Arabidopsis thaliana chromosome 2,full-Length cDNA At2g26210~unknown protein (P0552F09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU056950(S21011)~similar to Arabidopsis thaliana chromosome 2,full-Length cDNA At2g26210~unknown protein (P0552F09.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4264010/11FYVE zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48008.1.S1_x_at--48--3031Chr07:25530088..25530112 (25 bp)
AATGCCGGTTCACCTGGGAGTGTAT
LOC_Os07g42640
Os.48008.1.S1_x_at--528--1111Chr07:25530106..25530130 (25 bp)
AGTGTATCTAGTGCAGCTGACTCCT
LOC_Os07g42640
Os.48008.1.S1_x_at--530--5051Chr07:25530118..25530142 (25 bp)
GCAGCTGACTCCTTTTCAGGGTTAA
LOC_Os07g42640
Os.48008.1.S1_x_at--303--2251Chr07:25530177..25530201 (25 bp)
AAATTCAGCGTTTCACAGTGCACCT
LOC_Os07g42640
Os.48008.1.S1_x_at--678--3311Chr07:25530190..25530214 (25 bp)
CACAGTGCACCTGCTGTTATTGAGT
LOC_Os07g42640
Os.48008.1.S1_x_at--690--5431Chr07:25530259..25530386 (25 bp)
GAACCTGTGCCTGTAAAGTCGAATC
LOC_Os07g42640
Os.48008.1.S1_x_at--526--7051Chr07:25530434..25530458 (25 bp)
GTCAAGAAGGCTTCGGCCACTTCAA
LOC_Os07g42640
Os.48008.1.S1_x_at--331--4811Chr07:25530749..25530773 (25 bp)
GCTCATTCTTAAATCTTGGCCTGAT
LOC_Os07g42640
Os.48008.1.S1_x_at--737--10571NONE
TTCTCAGCCAGGCTGCACTATTTAA
NONE
Os.48008.1.S1_x_at--884--1251Chr07:25531570..25531594 (25 bp)
AGATTGCTCTTATTCTCATGGATAA
LOC_Os07g42640
Os.48008.1.S1_x_at--902--2371Chr07:25532071..25532095 (25 bp)
AAACTCCTTTGGATTGTGCTCCAGC
LOC_Os07g42640
Target Sequence 
AATGCCGGTTCACCTGGGAGTGTATCTAGTGCAGCTGACTCCTTTTCAGGGTTAAACTTGGGGGAAGATGATGCTTCATC
ACCTATGAAAAATTCAGCGTTTCACAGTGCACCTGCTGTTATTGAGTGCAAATGTGGAATGCCTTTGTGTATATGCGANG
CTCCGAAACCAGAACCTGTGCCTGTAAAGTCGAATCCTAGGCCAAAAAAATCTTCTACCAATCAACAATCTGCTGAATCA
AGTGTCAAGAAGGCTTCGGCCACTTCAAGCAGCAACTCAAGCTCATTCTTAAATCTTGGCCTGATGAGCAATGATACTAA
TGATAAGGGTCCTTCTGAATATGATGTTACTGGGGAGGGACTGAGGGAAGCAATTAAGAGTGGGGATATTAAAGCTGTCA
AGAAACTTCTCAGCCAGGCTGCACTATTTAACCAGACAGAGATTGCTCTTATTCTCATGGATAATGGAGCAAATATTCAG
AGCAAAAATGGACAAGGGGAAACTCCTTTGGATTGTGCTCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48008.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis