Browse Element(s) Details


Os.48035.1.S1_at

Description gb:AK121122.1
DB_XREF= gi:37990745
TID=Os.48035.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074I17, full insert sequence.
FL= gb:AK121122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3288010/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed
LOC_Os04g32890Os.46500.1.S1_at9/114+19678051..19679973transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g32900NANA4+19687057..19687524transposon protein, putative, unclassified
LOC_Os04g32910OsAffx.30226.2.S1_s_at7/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_x_at6/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_at5/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.30226.2.S1_x_at3/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042149biological_processcellular response to glucose starvation
GO:0030295molecular_functionprotein kinase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48035.1.S1_at--1150--1671Chr04:19666703..19666727 (25 bp)
AGCCTGAAGGGTACTCATTTCTGCA
LOC_Os04g32880
Os.48035.1.S1_at--409--5651Chr04:19666616..19666640 (25 bp)
GACAGCTTAGAACTTCGCGACCAAG
LOC_Os04g32880
Os.48035.1.S1_at--254--3151Chr04:19666581..19666605 (25 bp)
AATTCATGCCTGGATTTGCTGCTTG
LOC_Os04g32880
Os.48035.1.S1_at--1085--351Chr04:19665400..19665424 (25 bp)
ATAATGGCGCTCTCCTTGATGTCTA
LOC_Os04g32880
Os.48035.1.S1_at--281--6271Chr04:19665210..19665407 (25 bp)
GATGTCTACTCGCTCAGTGATATCA
LOC_Os04g32880
Os.48035.1.S1_at--867--7511NONE
GTGGAGCATGCCTTGGAGCTGCAAT
NONE
Os.48035.1.S1_at--484--5371Chr04:19664339..19664363 (25 bp)
GAAGACACTGTCATACCTGCTTGAG
LOC_Os04g32880
Os.48035.1.S1_at--1089--10751Chr04:19664319..19664343 (25 bp)
TTGAGCACTAGTACCTTCCTGGAGG
LOC_Os04g32880
Os.48035.1.S1_at--141--8371Chr04:19664149..19664173 (25 bp)
GGCGAGTCGTCGTTATTGAACCAAG
LOC_Os04g32880
Os.48035.1.S1_at--558--7631Chr04:19664092..19664116 (25 bp)
GGGACGCATTTACATTTCTCATTGG
LOC_Os04g32880
Os.48035.1.S1_at--491--6971Chr04:19664056..19664080 (25 bp)
GTAGCCAGCCATTCCATACATGAAA
LOC_Os04g32880
Target Sequence 
AGCCTGAAGGGTACTCATTTCTGCAAAACCAGATTGTCAGTATGCCTATTGGTACATGGTCACCACATACTGGCAAGGCA
AGCAATAGACAGCTTAGAACTTCGCGACCAAGCACTCCTCTAAATTCATGCCTGGATTTGCTGCTTGAAGATAGAGTAAG
CTCAATTCCNATAGTTGACGATAATGGCGCTCTCCTTGATGTCTACTCGCTCAGTGATATCATGGCTCTAGGCAAGAATG
ATGTCTACACTCGTATTGAGCTTGAACAGGTGACGGTGGAGCATGCCTTGGAGCTGCAATACCAGGTGAATGGCCGAAGA
CACTGTCATACCTGCTTGAGCACTAGTACCTTCCTGGAGGTTTTGGAGCAATNGTCAGCTCCAGGGGTGCGGCGAGTCGT
CGTTATTGAACCAAGGAGCAGATTTGTGCAAGGAATAATCTCATTGAGGGACGCATTTACATTTCTCATTGGATAACATT
TGTGTAGCCAGCCATTCCATACATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis