Browse Element(s) Details


Os.48040.1.A1_at

Description gb:AK111723.1
DB_XREF= gi:37988386
TID=Os.48040.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027E19, full insert sequence.
FL= gb:AK111723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1141411/11Floral homeotic protein AGAMOUS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11370Os.52040.1.S1_at11/115+6398776..6402275expressed protein
LOC_Os05g11380OsAffx.4301.2.S1_at11/115+6413046..6413875SRF-type transcription factor family protein
LOC_Os05g11390NANA5+6417218..6417933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.11264.1.S1_s_at3/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.20408.1.S1_at1/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11414Os.48040.1.A1_at11/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.14637.1.S1_at11/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.4301.1.S1_at8/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.4301.2.S1_at2/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11428Os.52834.1.S1_at8/115+6447454..6455768expressed protein
LOC_Os05g11428Os.55138.1.S1_x_at1/115+6447454..6455768expressed protein
LOC_Os05g11428OsAffx.13191.1.A1_at1/115+6447454..6455768expressed protein
LOC_Os05g11428Os.15238.1.S1_at1/115+6447454..6455768expressed protein
LOC_Os05g11442NANA5+6457140..6457629NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010047biological_processfruit dehiscence
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0048497biological_processmaintenance of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48040.1.A1_at--71--1451Chr05:6427379..6427403 (25 bp)
AGAACGAATTGCTGTGTGCTGAAAT
LOC_Os05g11414
Os.48040.1.A1_at--694--7971Chr05:6426428..6426452 (25 bp)
GGATCCGTATCATGCAACTATCTCA
LOC_Os05g11414
Os.48040.1.A1_at--776--3691Chr05:6426411..6426435 (25 bp)
CTATCTCAATCATGCATGTGCCTTC
LOC_Os05g11414
Os.48040.1.A1_at--687--3071Chr05:6426404..6426428 (25 bp)
AATCATGCATGTGCCTTCTTCAAGG
LOC_Os05g11414
Os.48040.1.A1_at--364--2171Chr05:6426359..6426383 (25 bp)
ACACTGTGTCAGTAGAACTTTTATG
LOC_Os05g11414
Os.48040.1.A1_at--290--7471Chr05:6426335..6426359 (25 bp)
GTGTGAACTCTTGTATGCATGAATA
LOC_Os05g11414
Os.48040.1.A1_at--106--9332Chr05:6426300..6426324 (25 bp)
TCCCATAATTCAGGCTTGGCACTAT
LOC_Os05g11414
Os.48040.1.A1_at--520--10872Chr05:6426285..6426309 (25 bp)
TTGGCACTATCAAGGTGATGTACCT
LOC_Os05g11414
Os.48040.1.A1_at--986--6971Chr05:6426266..6426290 (25 bp)
GTACCTAAGTATTGGTTCAACCTGT
LOC_Os05g11414
Os.48040.1.A1_at--1129--2251Chr05:6426234..6426258 (25 bp)
AAATACTTCATACCCTTCCTATGTT
LOC_Os05g11414
Os.48040.1.A1_at--1042--291Chr05:6426225..6426249 (25 bp)
ATACCCTTCCTATGTTTATATATGA
LOC_Os05g11414
Target Sequence 
AGAACGAATTGCTGTGTGCTGAAATTGAGTATATGCAGAGAAGGGAAACGGAGCTGCNAGAATGACAACATGTACTTAAA
GAGCAAAGTTGCTGAGAGTGAAAGAGGACTGCAAACAGTGAACATGATGGGTTCAGCATNTACGAGCGAATGAAAGATAA
ATATGGATCCGTATCATGCAACTATCTCAATCATGCATGTGCCTTCTTCAAGGAGACTGATCAGTTAGATATTACACTGT
GTCAGTAGAACTTTTATGTGTGAACTCTTGTATGCATGAATAATTAACTTTATCCCATAATTCAGGCTTGGCACTATCAA
GGTGATGTACCTAAGTATTGGTTCAACCTGTGAAATTAAAATACTTCATACCCTTCCTATGTTTATATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48040.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis