Browse Element(s) Details


Os.48048.1.A1_at

Description gb:CR279984
DB_XREF= gi:44666550
DB_XREF=CR279984
CLONE=p570d10p5
TID=Os.48048.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48048 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3575010/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed
LOC_Os02g35730NANA2+21462415..21462882hypothetical protein
LOC_Os02g35740NANA2+21464575..21465267hypothetical protein
LOC_Os02g35750Os.52706.1.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.52706.2.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.48048.1.A1_at10/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35760Os.53416.1.S1_at11/112+21468864..21471763Protein kinase domain containing protein, expressed
LOC_Os02g35770Os.2362.1.S1_a_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35770Os.2362.2.S1_x_at11/112+21481741..21484025Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48048.1.A1_at--1077--6811Chr02:21468660..21468684 (25 bp)
GTTTATATATATGCAAGGCACTGAT
LOC_Os02g35750
Os.48048.1.A1_at--392--931Chr02:21468675..21468699 (25 bp)
AGGCACTGATAACCTTGTAAGTTGT
LOC_Os02g35750
Os.48048.1.A1_at--1004--551Chr02:21468686..21468710 (25 bp)
ACCTTGTAAGTTGTGAACCTTTGCA
LOC_Os02g35750
Os.48048.1.A1_at--207--6631Chr02:21468695..21468719 (25 bp)
GTTGTGAACCTTTGCATATAAATTT
LOC_Os02g35750
Os.48048.1.A1_at--716--9751Chr02:21468721..21468745 (25 bp)
TAATGATTCAGGCTCACCAGTATAT
LOC_Os02g35750
Os.48048.1.A1_at--594--3491Chr02:21468729..21468753 (25 bp)
CAGGCTCACCAGTATATGATGCCCT
LOC_Os02g35750
Os.48048.1.A1_at--216--6891Chr02:21468740..21468764 (25 bp)
GTATATGATGCCCTCCTGTAGCTAA
LOC_Os02g35750
Os.48048.1.A1_at--729--6351Chr02:21468746..21468770 (25 bp)
GATGCCCTCCTGTAGCTAATAGTTT
LOC_Os02g35750
Os.48048.1.A1_at--1082--6951Chr02:21468757..21468781 (25 bp)
GTAGCTAATAGTTTTTCCCGTGTCA
LOC_Os02g35750
Os.48048.1.A1_at--1122--1172Chr02:21468766..21468790 (25 bp)
AGTTTTTCCCGTGTCAAATCAAATG
LOC_Os02g35750
Os.48048.1.A1_at--880--8671NONE
TGTGTCCCCCCAATTATGCAATGTA
NONE
Target Sequence 
GTTTATATATATGCAAGGCACTGATAACCTTGTAAGTTGTGAACCTTTGCATATAAATTTNTAATGATTCAGGCTCACCA
GTATATGATGCCCTCCTGTAGCTAATAGTTTTTCCCGTGTCAAATCAAATGANTTTTGGTTTANGCANAACCANNNNNNN
NTTATNGTGTGTCCCCCCAATTATGCAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48048.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis