Browse Element(s) Details


Os.4820.1.S1_at

Description gb:AK109153.1
DB_XREF= gi:32994362
TID=Os.4820.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F12, full insert sequence.
FL= gb:AK109153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4017011/11expressed protein
LOC_Os05g142201/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4820.1.S1_at--1067--4551Chr05:23510373..23510397 (25 bp)
GCGCCATTCGTGATCTGCGGCAAGT
LOC_Os05g40170
Os.4820.1.S1_at--383--6411Chr05:23510362..23510386 (25 bp)
GATCTGCGGCAAGTGCTCGGAGCTT
LOC_Os05g40170
Os.4820.1.S1_at--560--1131Chr05:23510351..23510375 (25 bp)
AGTGCTCGGAGCTTCTGCGGACGCC
LOC_Os05g40170
Os.4820.1.S1_at--140--7351Chr05:23510272..23510296 (25 bp)
GTGCAACGAAGTGCTCGAGCTGTCC
LOC_Os05g40170
Os.4820.1.S1_at--167--1511Chr05:23510222..23510246 (25 bp)
AGCACCGGCCGATCAGGACGTGCTC
LOC_Os05g40170
Os.4820.1.S1_at--326--4031Chr05:23510021..23510045 (25 bp)
CGTTGCCTTTGTCATTAACATGTGG
LOC_Os05g40170
Os.4820.1.S1_at--597--7131Chr05:23510011..23510035 (25 bp)
GTCATTAACATGTGGGCTCAGGAAT
LOC_Os05g40170
Os.4820.1.S1_at--262--3994Chr01:24742776..24742795 (20 bp)
CGGGCTCACATGTTAGTGACAAAGT
NONE
Os.4820.1.S1_at--889--6791Chr05:23509869..23509893 (25 bp)
GTTATTATTAGTCGCTAACCCAGAC
LOC_Os05g40170
Os.4820.1.S1_at--182--7171Chr05:23509859..23509883 (25 bp)
GTCGCTAACCCAGACGTTACAAATG
LOC_Os05g40170
Os.4820.1.S1_at--316--6771Chr05:23509844..23509868 (25 bp)
GTTACAAATGCTACGAAATTGGCTA
LOC_Os05g40170
Target Sequence 
GCGCCATTCGTGATCTGCGGCAAGTGCTCGGAGCTTCTGCGGACGCCGCCGCCGCCGCGGCCACGGAGGAGGAGGTGGAC
CACCAGGATACGGTGCGGCGAGTGCAACGAAGTGCTCGAGCTGTCCCTTCCCGCCGGCGGCGTCCCGGCTCAGCACCGGC
CGATCAGGACGTGCTCGGCGCCGCTGGTCTCCGACCACCACCGGCCACTGCCACGACGGCTGGAGTGAGGCGAAGAGCGC
GCACGGTGGCCATGANCNATTTGTTGATGGAGGGCTCACTGNTGAGCTGAAAGGGGGAAAACCTCACGCTAANATGGATG
GATGGGATTGAGGTTCNCCNCCATCGAATGCNCGTTGCCTTTGTCATTAACATGTGGGCTCAGGAATCANCGGGCTCACA
TGTTAGTGACAAAGTCACATGACTTCGACCNCGAAGGATGCTGANCTGGATTGTTGATGGAAGTTTTGAANAGTTGTTTT
TGAANAATGATTTTTTTTCTTTTTGTTATTATTAGTCGCTAACCCAGACGTTACAAATGCTACGAAATTGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis