Browse Element(s) Details


Os.48215.1.A1_at

Description gb:CR293259
DB_XREF= gi:44679825
DB_XREF=CR293259
CLONE=y823d01p3
TID=Os.48215.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.48215 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195242.1 (A.thaliana) O-methyltransferase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g439404/11O-methyltransferase ZRP4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43910Os.51231.1.S1_at11/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_x_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910Os.54620.1.A1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43920Os.50772.1.S1_at8/115+25472959..25478376Auxin response factor family protein, expressed
LOC_Os05g43930Os.13003.1.S1_at11/115+25481311..25483018O-methyltransferase ZRP4, putative, expressed
LOC_Os05g43940Os.48215.1.A1_at4/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43940Os.13003.1.S1_at2/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43950Os.27201.1.S1_at11/115+25492433..25496551expressed protein
LOC_Os05g43950Os.18072.1.S1_x_at1/115+25492433..25496551expressed protein
LOC_Os05g43960OsAffx.15096.1.S1_at11/115+25496926..25498559No apical meristem protein, expressed
LOC_Os05g43970Os.53554.1.S1_at11/115+25498862..25503369expressed protein
LOC_Os05g43980NANA5+25506325..25507085hypothetical protein
LOC_Os05g43990NANA5+25508699..25512244retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48215.1.A1_at--345--9171NONE
TGCCATCAAGATATTGAAGTGCTGC
NONE
Os.48215.1.A1_at--220--10231NONE
TATTGAAGTGCTGCGGGAGATCCAT
NONE
Os.48215.1.A1_at--679--8051NONE
GGAGATCCATCCCTCTTAGAGACAA
NONE
Os.48215.1.A1_at--820--2851Chr05:25486111..25486135 (25 bp)
AAGGTTTTTGTGGAGGCTGGATTCA
LOC_Os05g43940
Os.48215.1.A1_at--468--7031Chr05:25486082..25486106 (25 bp)
GTACAAGATTATGCCGATCCTAGGT
LOC_Os05g43940
Os.48215.1.A1_at--780--1251Chr05:25486077..25486101 (25 bp)
AGATTATGCCGATCCTAGGTTTCAG
LOC_Os05g43940
Os.48215.1.A1_at--524--4511Chr05:25486070..25486094 (25 bp)
GCCGATCCTAGGTTTCAGGTCAATG
LOC_Os05g43940
Os.48215.1.A1_at--1133--6131Chr05:25486042..25486066 (25 bp)
GAGGTCTACCCTTGAAGGCGACCCT
NONE
Os.48215.1.A1_at--1027--2931Chr05:25486028..25486052 (25 bp)
AAGGCGACCCTGGTGATTAGTTGGT
NONE
Os.48215.1.A1_at--1043--6251Chr05:25485996..25486020 (25 bp)
GATGTGGACTGTTAGAATGTTTGTT
NONE
Os.48215.1.A1_at--534--431Chr05:25485947..25485970 (24 bp)
ATCATTGTATGGGTGTGTTTTCTTA
NONE
Target Sequence 
TGCCATCAAGATATTGAAGTGCTGCGGGAGATCCATCCCTCTTAGAGACAAAGGAGGGAAGNTCATAATCATGGACATAG
TGNTCGGAGCAGGNCCGTCTGACCNGAAGCACAGGGAGGTACAAGNGTTGTTCGATATGTACATCATGTTGGTCAATGGC
ATCGAAAGAGATGAGCAAGAGTGGAAGAAGGTTTTTGTGGAGGCTGGATTCAGTGGGTACAAGATTATGCCGATCCTAGG
TTTCAGGTCAATGATNGAGGTCTACCCTTGAAGGCGACCCTGGTGATTAGTTGGTGTGTGGAGATGTGGACTGTTAGAAT
GTTTGTTTGTTGTGAGATTCACAATAGTGATCATTGTATGGGTGTGTTTTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48215.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis