Browse Element(s) Details


Os.48287.1.S1_at

Description gb:AK103526.1
DB_XREF= gi:32988735
TID=Os.48287.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131L11, full insert sequence.
FL= gb:AK103526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3857011/11multidrug resistance P-glycoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005516molecular_functioncalmodulin binding
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48287.1.S1_at--367--2891Chr04:22696252..22696276 (25 bp)
AAGGTGGCCAACATGCACGGCTTCG
LOC_Os04g38570
Os.48287.1.S1_at--553--4651Chr04:22695984..22696008 (25 bp)
GCGTCGACTCGATCGCCGTGGTGCA
LOC_Os04g38570
Os.48287.1.S1_at--312--4831Chr04:22695875..22695899 (25 bp)
GCTACACCACGGCTGATCGTATCAG
LOC_Os04g38570
Os.48287.1.S1_at--978--6391Chr04:22695861..22695885 (25 bp)
GATCGTATCAGTTCAGGGCCTAGGT
LOC_Os04g38570
Os.48287.1.S1_at--991--9431Chr04:22695849..22695873 (25 bp)
TCAGGGCCTAGGTTCCGGGTGTACA
LOC_Os04g38570
Os.48287.1.S1_at--195--891Chr04:22695814..22695838 (25 bp)
AGGCCAGTAATCGTCATGGTGCTGT
LOC_Os04g38570
Os.48287.1.S1_at--722--4931Chr04:22695770..22695794 (25 bp)
GCTTGGGTACAACTGTTTTCTTCTT
LOC_Os04g38570
Os.48287.1.S1_at--931--10551Chr04:22695753..22695777 (25 bp)
TTCTTCTTCCTGTAACCGATCAGGA
LOC_Os04g38570
Os.48287.1.S1_at--524--2611Chr04:22695740..22695764 (25 bp)
AACCGATCAGGATTATGCCGGATGT
LOC_Os04g38570
Os.48287.1.S1_at--396--7431Chr04:22695717..22695741 (25 bp)
GTGTTTTGGCACTAATGGCGGCTCT
LOC_Os04g38570
Os.48287.1.S1_at--640--2951Chr04:22695704..22695728 (25 bp)
AATGGCGGCTCTGGCAATTTTAGAT
LOC_Os04g38570
Target Sequence 
AAGGTGGCCAACATGCACGGCTTCGTCAGCGCGCTCCCGGAGGGCTACAAGACCCCCGTCGGCGAGCGCGGGGTGCAGCT
CTCGGGCGGGCAGAAGCAGCGGATCGCCATCGCGCGCGCCGTGCTCAAGGACCCCGCCGTGCTCCTCCTCGACGAGGCGA
CGAGCGCGCTGGACGCGGAGTCCGAGTGCGTGCTGCAGGAGGCGCTCGAGCGGATCATGAAGGGCCGGACCGCGGTGCTG
GTGGCGCACCGGCTGTCGACCATCCGCGGCGTCGACTCGATCGCCGTGGTGCAGGACGGGCGCGTCGTCGAGCAGGGCAG
CCACGGCGAGCTCGTGTCGCGGCCCGACGGCGCCTACTCGCGGCTGCTGCAGCTGCAGCTACACCACGGCTGATCGTATC
AGTTCAGGGCCTAGGTTCCGGGTGTACAGAAGTGGGCGAGGCCAGTAATCGTCATGGTGCTGTGCGGGTGGTCAGATGAT
GTGCTTGGGTACAACTGTTTTCTTCTTCCTGTAACCGATCAGGATTATGCCGGATGTGTTTTGGCACTAATGGCGGCTCT
GGCAATTTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis