Browse Element(s) Details


Os.48351.1.S1_at

Description gb:AK061596.1
DB_XREF= gi:32971614
TID=Os.48351.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C04, full insert sequence.
FL= gb:AK061596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g501407/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed
LOC_Os03g50140Os.48351.1.S1_at7/113+28547492..28548294Plastocyanin-like domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_s_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50150OsAffx.13433.1.S1_at11/113+28549742..28552983NB-ARC domain containing protein, expressed
LOC_Os03g50160Os.4715.1.S1_at11/113+28553612..28555498Chemocyanin precursor, putative, expressed
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48351.1.S1_at--191--9431Chr03:28547813..28547835 (23 bp)
TCGTGTTCAGGTACTTGCCGTGGAT
LOC_Os03g50140
Os.48351.1.S1_at--137--2071Chr03:28547801..28547825 (25 bp)
ACTTGCCGTGGATGCACAACGTGGT
LOC_Os03g50140
Os.48351.1.S1_at--417--2631Chr03:28547646..28547670 (25 bp)
AACCTCGGCATGAAGATGGTCGTCA
LOC_Os03g50140
Os.48351.1.S1_at--939--1391Chr03:28547591..28547615 (25 bp)
AGACTGTTTCGTACGTCTCGATCGA
LOC_Os03g50140
Os.48351.1.S1_at--353--9131Chr03:28547559..28547583 (25 bp)
TGCTGTGAAATGTCACACTCTCTCT
LOC_Os03g50140
Os.48351.1.S1_at--507--9551Chr03:28547537..28547561 (25 bp)
TCTATCTTGTTCCATCCGGTTCGTT
LOC_Os03g50140
Os.48351.1.S1_at--1017--4211Chr03:28547522..28547546 (25 bp)
CCGGTTCGTTCTCAGTTTTTAGCAT
LOC_Os03g50140
Os.48351.1.S1_at--1004--8791NONE
TGTTCTATGCCGGTGTGACGCGACT
NONE
Os.48351.1.S1_at--532--8931NONE
TGACGCGACTCGGTTTGCCAATTGT
NONE
Os.48351.1.S1_at--557--8671Chr03:28547430..28547454 (25 bp)
TGTGTGTGCATTGTTGACGCTGACA
NONE
Os.48351.1.S1_at--1139--1951NONE
ACTGTCTTCGCCACTGATGATGATA
NONE
Target Sequence 
TCGTGTTCAGGTACTTGCCGTGGATGCACAACGTGGTGGCCGTCGACGAAGACGGNTACGCCGACTGCAACCCGCCGCCG
TTCTCGAGGTACTACACCTCCGGCTCCGACAGCGTCAGGCTCGCCAGGGGGGACAACTTCTTCGTCTGCACCCGCTACGG
CCACTGCAACCTCGGCATGAAGATGGTCGTCACCGCCGNGTGANTGANGGAGAAACATGTCAAGACTGTTTCGTACGTCT
CGATCGAGCGAAAATGCTGTGAAATGTCACACTCTCTCTATCTTGTTCCATCCGGTTCGTTCTCAGTTTTTAGCATTTTG
GATGATTGATTAGAGGATTCTCTANCTGTTCTATGCCGGTGTGACGCGACTCGGTTTGCCAATTGTGTGTGCATTGTTGA
CGCTGACAAGATGCGTTTGTTCTGAAATCTGAAGAGAAGTCACTGTCTTCGCCACTGATGATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis