Browse Element(s) Details


Os.48379.1.A1_x_at

Description gb:CR281954
DB_XREF= gi:44668520
DB_XREF=CR281954
CLONE=p545e09p3
TID=Os.48379.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48379 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2866011/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28610Os.38289.2.S1_s_at1/119+17405704..17411996Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28640NANA9+17420209..17421449esterase, putative, expressed
LOC_Os09g28650Os.55582.1.S1_at9/119+17423563..17424621esterase, putative, expressed
LOC_Os09g28660Os.48379.1.A1_x_at11/119+17426502..17427686esterase, putative, expressed
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48379.1.A1_x_at--65--7431Chr09:17427357..17427381 (25 bp)
GTGTTCTTCCTGGAGAAGCCGGAGT
LOC_Os09g28660
Os.48379.1.A1_x_at--152--1451Chr09:17427370..17427394 (25 bp)
AGAAGCCGGAGTGCGCCAAGGCCAA
LOC_Os09g28660
Os.48379.1.A1_x_at--557--8471Chr09:17427415..17427439 (25 bp)
TGGCGTTCATCTCCGCCTCCTGAGT
LOC_Os09g28660
Os.48379.1.A1_x_at--798--8891Chr09:17427435..17427459 (25 bp)
TGAGTCCACCTGGGCCGCCGATTAG
LOC_Os09g28660
Os.48379.1.A1_x_at--109--6111Chr09:17427436..17427460 (25 bp)
GAGTCCACCTGGGCCGCCGATTAGG
LOC_Os09g28660
Os.48379.1.A1_x_at--835--7231Chr09:17427438..17427462 (25 bp)
GTCCACCTGGGCCGCCGATTAGGTG
LOC_Os09g28660
Os.48379.1.A1_x_at--493--5331Chr09:17427488..17427512 (25 bp)
GAAGTCGAAGCGGTCGATCTGAGCA
LOC_Os09g28660
Os.48379.1.A1_x_at--435--2851Chr09:17427489..17427513 (25 bp)
AAGTCGAAGCGGTCGATCTGAGCAG
LOC_Os09g28660
Os.48379.1.A1_x_at--904--9351Chr09:17427492..17427516 (25 bp)
TCGAAGCGGTCGATCTGAGCAGTGT
LOC_Os09g28660
Os.48379.1.A1_x_at--898--2671Chr09:17427495..17427519 (25 bp)
AAGCGGTCGATCTGAGCAGTGTGTA
LOC_Os09g28660
Os.48379.1.A1_x_at--484--1631Chr09:17427496..17427520 (25 bp)
AGCGGTCGATCTGAGCAGTGTGTAT
LOC_Os09g28660
Target Sequence 
GTGTTCTTCCTGGAGAAGCCGGAGTGCGCCAAGGCCAAGGAGCTCATGGACCGCGTCGTGGCGTTCATCTCCGCCTCCTG
AGTCCACCTGGGCCGCCGATTAGGTGGGGGTGGATTCCGGCGAGGGAGGGGGAAGTCGAAGCGGTCGATCTGAGCAGTGT
GTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48379.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis