Browse Element(s) Details


Os.48485.1.S1_at

Description gb:AK121386.1
DB_XREF= gi:37991009
TID=Os.48485.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127K17, full insert sequence.
FL= gb:AK121386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4774411/11Myb-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47700OsAffx.6537.1.S1_at1/112+29161096..29163184hypothetical protein
LOC_Os02g47710NANA2+29163379..29163617hypothetical protein
LOC_Os02g47720NANA2+29164890..29168068hypothetical protein
LOC_Os02g47730OsAffx.16451.1.A1_x_at2/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730Os.45161.1.A1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.22699.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.16451.1.A1_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.828.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47744OsAffx.24769.1.S1_s_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744Os.48485.1.S1_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744OsAffx.24769.1.S1_at3/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48485.1.S1_at--977--10111Chr02:29187818..29187842 (25 bp)
TATGACAGGGATACGCCAGATCGCT
LOC_Os02g47744
Os.48485.1.S1_at--852--8111Chr02:29187919..29187943 (25 bp)
GGACGTGGATCGCATTGACTCTACA
LOC_Os02g47744
Os.48485.1.S1_at--64--6231Chr02:29187945..29187969 (25 bp)
GAGGCCATCAAGGATCCCATTACAA
LOC_Os02g47744
Os.48485.1.S1_at--1005--2193Chr02:29187966..29187990 (25 bp)
ACAACAGCTCCAATGCTAGCAGCAG
LOC_Os02g47744
Os.48485.1.S1_at--919--6151Chr02:29189386..29189410 (25 bp)
GAGGAGGTACCACAACTTTCAGTGA
LOC_Os02g47744
Os.48485.1.S1_at--391--7371Chr02:29189413..29189437 (25 bp)
GTGACATTGACATCTCGAAAGCCGA
LOC_Os02g47744
Os.48485.1.S1_at--130--2671Chr02:29189431..29189455 (25 bp)
AAGCCGAAAGCAGCCTGAGTTCCAG
LOC_Os02g47744
Os.48485.1.S1_at--106--6071Chr02:29189447..29189471 (25 bp)
GAGTTCCAGCAAGACCGACACATAT
LOC_Os02g47744
Os.48485.1.S1_at--291--271Chr02:29189468..29189492 (25 bp)
ATATGATCGACTGTCCCTGCAGATG
LOC_Os02g47744
Os.48485.1.S1_at--927--6331Chr02:29189489..29189513 (25 bp)
GATGCTACCTTCACTATTTCGTTTA
LOC_Os02g47744
Os.48485.1.S1_at--530--7471Chr02:29189531..29189555 (25 bp)
GTGTGTGAATCAGAACTGGCCCTAA
LOC_Os02g47744
Target Sequence 
TATGACAGGGATACGCCAGATCGCTGGCAGAATGTGGCACGGGCAGTTGGTGGTGGAAAGTCAGTTGATGATGTGAAGAG
GCACTATGAAAAGCTGATCAAGGACGTGGATCGCATTGACTCTACAGGAGGCCATCAAGGATCCCATTACAACAGCTCCA
ATGCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTCTCGGGGCAGTGCCAATGAGGACCAGAGGAGGAGGTACCACAAC
TTTCAGTGAATGTGACATTGACATCTCGAAAGCCGAAAGCAGCCTGAGTTCCAGCAAGACCGACACATATGATCGACTGT
CCCTGCAGATGCTACCTTCACTATTTCGTTTATGNTTTCTATTATGCGCGTGTGTGAATCAGAACTGGCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis