Browse Element(s) Details


Os.48573.1.S1_at

Description gb:AK111819.1
DB_XREF= gi:37988482
TID=Os.48573.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009A16, full insert sequence.
FL= gb:AK111819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3234011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32310Os.51662.1.S1_at11/114+19178461..19183706Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g32320OsAffx.14090.1.S1_at11/114+19186295..19189420Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os04g32330Os.8748.1.S1_at11/114+19190913..19195380Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed
LOC_Os04g32340Os.48573.1.S1_at11/114+19195978..19204220RNA recognition motif family protein, expressed
LOC_Os04g32350Os.22245.1.S1_at7/114+19211451..19214042RNA polymerase III RPC4 family protein, expressed
LOC_Os04g32360NANA4+19219502..19220035hypothetical protein
LOC_Os04g32370Os.21317.1.S1_at11/114+19224151..19231311hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48573.1.S1_at--1122--10071Chr04:19196530..19196554 (25 bp)
TAGGATCTAAACTACGCCTGCTGGC
LOC_Os04g32340
Os.48573.1.S1_at--354--4471Chr04:19196515..19196539 (25 bp)
GCCTGCTGGCATTTTGGTAAATCAT
LOC_Os04g32340
Os.48573.1.S1_at--265--431Chr04:19196495..19196519 (25 bp)
ATCATTGTCTGATCTTCCTTGAGAG
LOC_Os04g32340
Os.48573.1.S1_at--893--6951Chr04:19196435..19196459 (25 bp)
GTAGCATCCTGCTGAAAGCGGTTCA
LOC_Os04g32340
Os.48573.1.S1_at--92--6751Chr04:19196415..19196439 (25 bp)
GTTCATACTATGTTGTTAGGTCTCT
LOC_Os04g32340
Os.48573.1.S1_at--638--1031Chr04:19196398..19196422 (25 bp)
AGGTCTCTGTATTTTGTAGCTCTCC
LOC_Os04g32340
Os.48573.1.S1_at--782--8751Chr04:19196384..19196408 (25 bp)
TGTAGCTCTCCCTTGCTGAAAGCAG
LOC_Os04g32340
Os.48573.1.S1_at--1019--1491Chr04:19196364..19196388 (25 bp)
AGCAGCTCCATGTGGATTCCATTTT
LOC_Os04g32340
Os.48573.1.S1_at--295--9531Chr04:19196337..19196361 (25 bp)
TCTCACTGAAGCAGCAACCTTTTTT
LOC_Os04g32340
Os.48573.1.S1_at--91--10591Chr04:19196302..19196326 (25 bp)
TTCTCATGTAGGTTTCTTGTCCAAA
LOC_Os04g32340
Os.48573.1.S1_at--510--5111Chr04:19196219..19196243 (25 bp)
GCAACTTCTCTAACCAAATACTACC
LOC_Os04g32340
Target Sequence 
TAGGATCTAAACTACGCCTGCTGGCATTTTGGTAAATCATTGTCTGATCTTCCTTGAGAGAATGTAATTGGTGTTGTATA
CTTTCTTGAATGGAAGTAGCATCCTGCTGAAAGCGGTTCATACTATGTTGTTAGGTCTCTGTATTTTGTAGCTCTCCCTT
GCTGAAAGCAGCTCCATGTGGATTCCATTTTGNTCTCACTGAAGCAGCAACCTTTTTTATTTTTAAGTTTCTCATGTAGG
TTTCTTGTCCAAAGTTTCNNTTNANNGGAAAACATGACATGTTCACGTANANNANNGCACCCCTTTTCAATGCAACTTCT
CTAACCAAATACTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis