Browse Element(s) Details


Os.48600.1.A1_s_at

Description gb:CR285624
DB_XREF= gi:44672190
DB_XREF=CR285624
CLONE=p810g06p3
TID=Os.48600.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48600 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1082011/11Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein
LOC_Os09g10810OsAffx.18926.1.S1_x_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810OsAffx.18926.1.S1_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810Os.54774.1.S1_x_at1/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10820Os.48600.1.A1_s_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.49101.1.S1_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.48600.1.A1_at8/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10830NANA9+5905970..5906501hypothetical protein
LOC_Os09g10840Os.49497.1.S1_at11/119+5917077..5928773Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48600.1.A1_s_at--937--7951Chr09:5904025..5904049 (25 bp)
GGATCACAAGGCTGAACCCCGCAGT
LOC_Os09g10820
Os.48600.1.A1_s_at--964--2591Chr09:5904039..5904063 (25 bp)
AACCCCGCAGTTCTTATGTTGAAGG
LOC_Os09g10820
Os.48600.1.A1_s_at--1055--10551Chr09:5904049..5904073 (25 bp)
TTCTTATGTTGAAGGCGCACGGGAT
LOC_Os09g10820
Os.48600.1.A1_s_at--487--7991Chr09:5904070..5904094 (25 bp)
GGATGTCGCCGTTCTAGAAGCCATG
LOC_Os09g10820
Os.48600.1.A1_s_at--1021--5411Chr09:5904086..5904110 (25 bp)
GAAGCCATGCTTGAATCTAGTGCGA
LOC_Os09g10820
Os.48600.1.A1_s_at--762--9131Chr09:5904106..5904130 (25 bp)
TGCGAAGCAAGGAACCATGGTCCAA
LOC_Os09g10820
Os.48600.1.A1_s_at--917--111Chr09:5904183..5904207 (25 bp)
ATTCTTCAGCAAGTTGGTACGCCAA
LOC_Os09g10820
Os.48600.1.A1_s_at--187--7851Chr09:5904198..5904222 (25 bp)
GGTACGCCAATTATGTAGCTTTACT
LOC_Os09g10820
Os.48600.1.A1_s_at--64--9891Chr09:5904249..5904273 (25 bp)
TACATACCATTGAGAGTACAGCGTG
LOC_Os09g10820
Os.48600.1.A1_s_at--477--5011Chr09:5904280..5904304 (25 bp)
GCAGTGTTTCCAGAGAACCAACTTT
LOC_Os09g10820
Os.48600.1.A1_s_at--544--4371Chr09:5904297..5904321 (25 bp)
CCAACTTTCTTTGACTCCATACATA
LOC_Os09g10820
Target Sequence 
GGATCACAAGGCTGAACCCCGCAGTTCTTATGTTGAAGGCGCACGGGATGTCGCCGTTCTAGAAGCCATGCTTGAATCTA
GTGCGAAGCAAGGAACCATGGTCCAAGTGAAGAAATTCTAACATCCATAAAATTGTTCAAAAAAAGAGAGGGAAATGTAT
TCTTCAGCAAGTTGGTACGCCAATTATGTAGCTTTACTAATAAGGAACATTTTTTCCAAGTTAATACATACCATTGAGAG
TACAGCGTGCAAATAGCAGTGTTTCCAGAGAACCAACTTTCTTTGACTCCATACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48600.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis