Browse Element(s) Details


Os.48609.1.S1_s_at

Description gb:AK073395.1
DB_XREF= gi:32983418
TID=Os.48609.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044E21, full insert sequence.
FL= gb:AK073395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1516011/11Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15110Os.10731.1.A1_a_at11/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.46610.1.S1_x_at4/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.47999.2.A1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.38764.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.20877.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15120OsAffx.26903.1.S1_at11/115+8559715..8560026expressed protein
LOC_Os05g15130Os.20602.2.S1_x_at11/115+8560824..8563004hAT family dimerisation domain containing protein
LOC_Os05g15140Os.21083.1.S1_at11/115+8563863..8568769expressed protein
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15170NANA5+8592558..8593471Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g15180Os.55287.1.S1_at11/115+8595804..8597787expressed protein
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15200NANA5+8606261..8608023Zinc knuckle family protein
LOC_Os05g15210NANA5+8609337..8611693retrotransposon protein, putative, unclassified
LOC_Os05g15220NANA5+8612544..8617644retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48609.1.S1_s_at--176--10031Chr05:8587876..8587900 (25 bp)
TAGAAAGGGTGACCCCTCTAACACA
LOC_Os05g15160
Os.48609.1.S1_s_at--517--2891Chr05:8587880..8587904 (25 bp)
AAGGGTGACCCCTCTAACACATGCT
LOC_Os05g15160
Os.48609.1.S1_s_at--479--8911Chr05:8587885..8587909 (25 bp)
TGACCCCTCTAACACATGCTGTTGG
LOC_Os05g15160
Os.48609.1.S1_s_at--54--5891Chr05:8588767..8588791 (25 bp)
GAGCGCATAAGGAGTTGAATCTGTG
LOC_Os05g15160
Os.48609.1.S1_s_at--810--10711Chr05:8588781..8588805 (25 bp)
TTGAATCTGTGGATATAGTTGGGTA
LOC_Os05g15160
Os.48609.1.S1_s_at--998--3831Chr05:8588807..8588831 (25 bp)
CTGCTTTGATCGATCTGTATTGCCT
LOC_Os05g15160
Os.48609.1.S1_s_at--416--10771Chr05:8588812..8588836 (25 bp)
TTGATCGATCTGTATTGCCTCCGAG
LOC_Os05g15160
Os.48609.1.S1_s_at--285--9391Chr05:8588816..8588840 (25 bp)
TCGATCTGTATTGCCTCCGAGAAAT
LOC_Os05g15160
Os.48609.1.S1_s_at--582--4471Chr05:8588874..8588898 (25 bp)
GCCTGCTGTATCTCATCTTGTTTGT
LOC_Os05g15160
Os.48609.1.S1_s_at--98--3631Chr05:8588890..8588914 (25 bp)
CTTGTTTGTTATTGTCGATTTCGCT
LOC_Os05g15160
Os.48609.1.S1_s_at--1046--10231Chr05:8588894..8588918 (25 bp)
TTTGTTATTGTCGATTTCGCTTTGA
LOC_Os05g15160
Target Sequence 
TAGAAAGGGTGACCCCTCTAACACATGCTGTTGGCAATGTGTTAAAACGTGTCTTCGTCATTGGCTTCTCAATCATTGCA
TTCGGCAACAAGATCACCACACAAACAGGAATTGGCACTTGCATTGCCATAGCTGGTGTTGCACTCTATTCTTATATCAA
GGCTAAGATTGAAGAAGAGAAAACGCAAATGAAGAGCGCATAAGGAGTTGAATCTGTGGATATAGTTGGGTAGCTGCTTT
GATCGATCTGTATTGCCTCCGAGAAATAAAATGAGCTGTAAGATTTATAACAATCTAGGTGCCTGCTGTATCTCATCTTG
TTTGTTATTGTCGATTTCGCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48609.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis