Browse Element(s) Details


Os.48647.1.A1_at

Description gb:CR286557
DB_XREF= gi:44673123
DB_XREF=CR286557
CLONE=y820b09p3
TID=Os.48647.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48647 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176414.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g346241/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34570OsAffx.19157.1.S1_at10/1111+19738097..19739375LysM domain containing protein
LOC_Os11g34580OsAffx.31297.1.S1_at11/1111+19740269..19740538hypothetical protein
LOC_Os11g34590Os.28943.1.S1_x_at2/1111+19742786..19746022retrotransposon protein, putative, unclassified
LOC_Os11g34600NANA11+19746646..19752225retrotransposon protein, putative, unclassified
LOC_Os11g34610OsAffx.19158.1.S1_at9/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34610OsAffx.19159.1.S1_at2/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34624OsAffx.7293.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624OsAffx.19159.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624Os.48647.1.A1_at1/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34640NANA11+19775335..19776520hypothetical protein
LOC_Os11g34650Os.10763.1.S1_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34650Os.10763.2.S1_x_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34660OsAffx.30202.1.S1_x_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660OsAffx.6233.1.S1_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660Os.35273.2.S1_at1/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48647.1.A1_at--697--3571NONE
CATATGCCGGAGCTGGATTTGCCGT
NONE
Os.48647.1.A1_at--132--7951NONE
GGATTTGCCGTTGGTTCTGGCTCTG
NONE
Os.48647.1.A1_at--806--10051NONE
TAGTAACCTCGATTCTGCGGGATCT
NONE
Os.48647.1.A1_at--837--6571NONE
GATTCTGCGGGATCTTCTGAAGCTA
NONE
Os.48647.1.A1_at--140--3651NONE
CTTCTGAAGCTAGTGGTACCGTTGT
NONE
Os.48647.1.A1_at--267--4391NONE
GCCACGCCCTTAGAAAATCTTTAGA
NONE
Os.48647.1.A1_at--108--5611NONE
GACAATAATACCACTCTACAATCTA
NONE
Os.48647.1.A1_at--913--9511NONE
TCTACAATCTATCAGCAAATGGCAT
NONE
Os.48647.1.A1_at--448--3291NONE
CAAATGGCATCCGTAGAAACCTTTT
NONE
Os.48647.1.A1_at--484--10372Chr11:19767204..19767580 (25 bp)
TTTTTTCCATGTATTTGCTTGCATG
LOC_Os11g34624
Os.48647.1.A1_at--725--191NONE
ATTTGCTTGCATGTGCTACAAATAA
NONE
Target Sequence 
CATATGCCGGAGCTGGATTTGCCGTTGGTTCTGGCTCTGGCTCAGTGTTTAGTAACCTCGATTCTGCGGGATCTTCTGAA
GCTAGTGGTACCGTTGTTGTTGATGGTGAAGGACAAGCAGGAGGCAACCCTGGATCTAAAGTTTATGGGCCAGGTAGTGG
CACGGGTTCAGGTTCATCCATGCTGCATGAGTATTTTCCCGGTTTTACAAATGCACGTGCTAGTGCTAATGGTGGTGGCA
CCACTGATACTCAAAATGGTGGAANCGGTGCCGGTAACGGTGGTGGTTCTGGATATGCTGGGTTAGGGCCACGCCCTTAG
AAAATCTTTAGACAATAATACCACTCTACAATCTATCAGCAAATGGCATCCGTAGAAACCTTTTTTTCCATGTATTTGCT
TGCATGTGCTACAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48647.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis