Browse Element(s) Details


Os.4882.1.S1_at

Description gb:AK064393.1
DB_XREF= gi:32974411
TID=Os.4882.1
CNT=134
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1004_F02.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G01, full insert sequence.
FL= gb:AK121594.1 gb:AK106599.1 gb:AK064393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1402011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13980NANA10+7366103..7372198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13990NANA10+7372514..7375455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14004OsAffx.8351.1.S1_at11/1110+7378135..7378344NA
LOC_Os10g14020Os.4882.1.S1_at11/1110+7389078..7390228expressed protein
LOC_Os10g14030Os.46053.2.S1_x_at5/1110+7391341..7394355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14040OsAffx.24317.1.S1_at10/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.1.S1_x_at9/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.24317.6.S1_x_at4/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14040OsAffx.19019.1.S1_at1/1110+7399178..7405461transposon protein, putative, unclassified
LOC_Os10g14050Os.46845.1.S1_at11/1110+7408004..7409188expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001709biological_processcell fate determination
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4882.1.S1_at--1134--9291Chr10:7389897..7389921 (25 bp)
TCCGCGATGCAGTCCAAGACGTTGA
LOC_Os10g14020
Os.4882.1.S1_at--939--7351Chr10:7389735..7389759 (25 bp)
GTGAAGATCACTCTCCTAATGGCGG
LOC_Os10g14020
Os.4882.1.S1_at--904--8751Chr10:7389654..7389678 (25 bp)
TGTACCAGAACAACGCGGAGCACCT
LOC_Os10g14020
Os.4882.1.S1_at--647--4971Chr10:7389621..7389645 (25 bp)
GCATCCCGACCTACAGCGTGGAAAT
LOC_Os10g14020
Os.4882.1.S1_at--117--1231Chr10:7389510..7389534 (25 bp)
AGTTCCAGCGTATCGGCTTCAACGA
LOC_Os10g14020
Os.4882.1.S1_at--902--4491Chr10:7389403..7389427 (25 bp)
GCCGTAGCTAATGTCGCGTGTGAGT
LOC_Os10g14020
Os.4882.1.S1_at--121--4591Chr10:7389355..7389379 (25 bp)
GCGCATGTGTTGTACGTAGTCGACT
LOC_Os10g14020
Os.4882.1.S1_at--886--1131Chr10:7389338..7389362 (25 bp)
AGTCGACTGGCCTATTAGCTACGTA
LOC_Os10g14020
Os.4882.1.S1_at--640--4851Chr10:7389321..7389345 (25 bp)
GCTACGTACTGTCTTCGATGTTTCA
LOC_Os10g14020
Os.4882.1.S1_at--816--10111Chr10:7389268..7389292 (25 bp)
TATGGGTGACATGCTTCGACTTTAT
LOC_Os10g14020
Os.4882.1.S1_at--271--9151Chr10:7389242..7389266 (25 bp)
TGCGCAAGTGCCTGGTGTGCATTAT
LOC_Os10g14020
Target Sequence 
TCCGCGATGCAGTCCAAGACGTTGAACATGAACAAGCTTCTCAACATCAGTGAAGATCACTCTCCTAATGGCGGACGCCA
CTGGATGCAGCGGATGCAGCCGGACAGCTGCTCGGAGCAGAACGTGGNTGGTGTACCAGAACAACGCGGAGCACCTCCCC
AGCGGCATCCCGACCTACAGCGTGGAAATCATCAACGTCTGCACGGCGTGCACGGTGTACGACGTCCACATCTCCTGCGG
CGAGTTTGCCTCCGCGGAGCTCGTCGACCCCAGCCAGTTCCAGCGTATCGGCTTCAACGACTGTCTGGTGAAGGGCGGAG
GCCGGTTGGGTCCTAGCGAGGCCGTCTCCTTCCAGTACTCCAACTCCTTCGCCTACCCGCTCGCCGTAGCTAATGTCGCG
TGTGAGTAGGTTTTTTCAGTGGAAATGCGTGCGCATGTGTTGTACGTAGTCGACTGGCCTATTAGCTACGTACTGTCTTC
GATGTTTCAGACATTCAGTTGATCGAGCTTATTTATCTATGGGTGACATGCTTCGACTTTATNTGCGCAAGTGCCTGGTG
TGCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis