Browse Element(s) Details


Os.48830.1.S1_at

Description gb:AK109147.1
DB_XREF= gi:32994356
TID=Os.48830.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F05, full insert sequence.
FL= gb:AK109147.1 gb:AK072023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3849011/11GDP-fucose protein-O-fucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein
LOC_Os07g38470Os.52469.1.S1_at1/117+23108774..23109097hypothetical protein
LOC_Os07g38480Os.15805.1.S1_at11/117+23110477..23112224expressed protein
LOC_Os07g38490Os.48830.1.S1_at11/117+23114152..23118126GDP-fucose protein-O-fucosyltransferase 2, putative, expressed
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48830.1.S1_at--710--251Chr07:23117443..23117467 (25 bp)
ATATCTGTCTACTGATGCTGCCGAG
LOC_Os07g38490
Os.48830.1.S1_at--1--8951Chr07:23117506..23117530 (25 bp)
TGACAGGCAAGTCCCTCTTGTGAAA
LOC_Os07g38490
Os.48830.1.S1_at--595--3191Chr07:23117690..23117710 (21 bp)
CAATCAGGTTGAGGCCATGCTCGAC
LOC_Os07g38490
Os.48830.1.S1_at--932--9091Chr07:23117703..23117727 (25 bp)
TGCTCGACAAGACGATCTGTGCGCT
LOC_Os07g38490
Os.48830.1.S1_at--1058--7291Chr07:23117721..23117745 (25 bp)
GTGCGCTGTCGAACGTTTTCATAGG
LOC_Os07g38490
Os.48830.1.S1_at--886--271Chr07:23117741..23117765 (25 bp)
ATAGGTGCATCAGGCTCAACCTTCA
LOC_Os07g38490
Os.48830.1.S1_at--254--5671Chr07:23117771..23117795 (25 bp)
GACATCCTGCGTCTACGGAGAGGCT
LOC_Os07g38490
Os.48830.1.S1_at--570--5791Chr07:23117816..23117840 (25 bp)
GACGAATACCTCTGCCAGGGTGAGC
LOC_Os07g38490
Os.48830.1.S1_at--91--9851Chr07:23117954..23117978 (25 bp)
TAAATTGGCGTGTACATCCTAGTGT
LOC_Os07g38490
Os.48830.1.S1_at--593--6291Chr07:23117987..23118011 (25 bp)
GATGATATTTGTTGTACCGGTACCC
LOC_Os07g38490
Os.48830.1.S1_at--745--10351Chr07:23118063..23118087 (25 bp)
TTTTTGCGCTTGCTCAGTGTTCATA
LOC_Os07g38490
Target Sequence 
ATATCTGTCTACTGATGCTGCCGAGANTGAGACANGTCTCCTGCAATCNTNGNTTGTGTTCAATGACAGGCAAGTCCCTC
TTGTGAAAAGGCCAGAGCACCACAACTCTGAGAAATGGGATGCCTTGTTATACAGAAATCACATGGGTGGAGACAATCAG
GTTGAGGCCATGCTCGACAAGACGATCTGTGCGCTGTCGAACGTTTTCATAGGTGCATCAGGCTCAACCTTCACAGAGGA
CATCCTGCGTCTACGGAGAGGCTGGGGTTCTGCGTCCCACTGCGACGAATACCTCTGCCAGGGTGAGCTACCCAACTTCA
TAGCGGAGCTAGACTGAGAAAATGACATCNTAGAAGAAGAATTGACAGCTACATCCCCCTTTTTTTCCCCACTACGATCT
GGTGGCATGATACACATTCTGTAAATTGGCGTGTACATCCTAGTGTAAAAGAGCGATGATATTTGTTGTACCGGTACCCC
CATTGATTTGTTCGGTGTTGTTACACGGTTAGGCAATAGAAAGAGTTTGGTTTTTGCGCTTGCTCAGTGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis