Browse Element(s) Details


Os.48903.1.A1_s_at

Description gb:CR291009
DB_XREF= gi:44677575
DB_XREF=CR291009
CLONE=y604f09p3
TID=Os.48903.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48903 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3966011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed
LOC_Os09g39660Os.53586.1.S1_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39660Os.48903.1.A1_s_at11/119+22758450..22762056Zinc finger, C2H2 type family protein, expressed
LOC_Os09g39670Os.10960.1.S1_at11/119+22762384..22766477NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48903.1.A1_s_at--1087--4551Chr09:22761200..22761224 (25 bp)
GCGCCATCTTTTCCAGTAAAGAAGC
LOC_Os09g39660
Os.48903.1.A1_s_at--594--7031Chr09:22761215..22761239 (25 bp)
GTAAAGAAGCAGCTGCCTTCCTTTC
LOC_Os09g39660
Os.48903.1.A1_s_at--65--4791Chr09:22761226..22761485 (25 bp)
GCTGCCTTCCTTTCTCAAAGATGGA
LOC_Os09g39660
Os.48903.1.A1_s_at--998--6431Chr09:22761503..22761527 (25 bp)
GATCATGTGAAGCTTGTCCTGTGCC
LOC_Os09g39660
Os.48903.1.A1_s_at--532--10811Chr09:22761516..22761540 (25 bp)
TTGTCCTGTGCCCTGAAGGCTGAAG
LOC_Os09g39660
Os.48903.1.A1_s_at--411--1151Chr09:22761543..22761567 (25 bp)
AGTAACGTGGGATCCTGTTGAGCCG
LOC_Os09g39660
Os.48903.1.A1_s_at--970--371Chr09:22761593..22761617 (25 bp)
ATCATCAACCAATCGGAGTTACTAG
LOC_Os09g39660
Os.48903.1.A1_s_at--716--7891Chr09:22761641..22761665 (25 bp)
GGTTCCTGGCGTGTGGGCACTACTC
LOC_Os09g39660
Os.48903.1.A1_s_at--957--10171Chr09:22761796..22761820 (25 bp)
TATATGATATGACAGCCGGTGCGTG
LOC_Os09g39660
Os.48903.1.A1_s_at--1036--4251Chr09:22761811..22761835 (25 bp)
CCGGTGCGTGCGTTAACATTGGATT
LOC_Os09g39660
Os.48903.1.A1_s_at--1007--11Chr09:22761828..22761852 (25 bp)
ATTGGATTCGTTGCAAACATGGACA
LOC_Os09g39660
Target Sequence 
GCGCCATCTTTTCCAGTAAAGAAGCAGCTGCCTTCCTTTCTCAAAGATGGAAGGAAGCAATAGACGCAGATCATGTGAAG
CTTGTCCTGTGCCCTGAAGGCTGAAGCAAGTAACGTGGGATCCTGTTGAGCCGGCGAAGTAGTAAGGGTTGAGTCTGCAT
CATCAACCAATCGGAGTTACTAGAACTAGTGAAGTTGGCAGAGGGGGGTTCCTGGCGTGTGGGCACTACTCCGTAGGAAA
TGAAGTGGTGGCTTTTTGTTAGACGAGCAGGGAATTAAGCTGCATTTTAATTTGGTTTGGAGTAGATGACAGCCGGGGTT
CATGAACATTGAATTTATTTGTTTATATATACAGTTATAGTTATATGATATGACAGCCGGTGCGTGCGTTAACATTGGAT
TCGTTGCAAACATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48903.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis