Browse Element(s) Details


Os.4894.1.S1_a_at

Description gb:AK073094.1
DB_XREF= gi:32983117
TID=Os.4894.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033011G24, full insert sequence.
FL= gb:AK073094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3692011/11Histone deacetylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36390OsAffx.22848.3.S1_x_at2/115+21452268..21454435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36900OsAffx.14985.1.S1_at11/115+21472368..21473351Dof domain, zinc finger family protein
LOC_Os05g36910Os.4894.2.S1_a_at11/115+21474180..21476854NC domain-containing protein, putative, expressed
LOC_Os05g36920Os.4894.1.S1_a_at11/115+21478189..21481136Histone deacetylase family protein, expressed
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016575biological_processhistone deacetylation
GO:0045604biological_processregulation of epidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004406molecular_functionH3/H4 histone acetyltransferase activity
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4894.1.S1_a_at--987--1691Chr05:21478765..21478789 (25 bp)
AGCCACCTGTATTATATAAGCGCAC
LOC_Os05g36920
Os.4894.1.S1_a_at--35--231Chr05:21478752..21478776 (25 bp)
ATATAAGCGCACCAGTTCCAAGTCT
LOC_Os05g36920
Os.4894.1.S1_a_at--678--1651Chr05:21478747..21478771 (25 bp)
AGCGCACCAGTTCCAAGTCTGAAAC
LOC_Os05g36920
Os.4894.1.S1_a_at--651--7172Chr03:5309462..5309504 (24 bp)
GTCTGAAACCAAGTGCCAAGTCTGA
NONE
Os.4894.1.S1_a_at--1050--7271Chr05:21478719..21478743 (25 bp)
GTGCCAAGTCTGAATTATTGTCTAG
LOC_Os05g36920
Os.4894.1.S1_a_at--818--7171Chr05:21478712..21478736 (25 bp)
GTCTGAATTATTGTCTAGCAAGGAA
LOC_Os05g36920
Os.4894.1.S1_a_at--366--1491Chr05:21478696..21478720 (25 bp)
AGCAAGGAATGCTACCTGCTGCCAC
LOC_Os05g36920
Os.4894.1.S1_a_at--1097--931Chr05:21478692..21478716 (25 bp)
AGGAATGCTACCTGCTGCCACATCA
LOC_Os05g36920
Os.4894.1.S1_a_at--159--9111Chr05:21478680..21478704 (25 bp)
TGCTGCCACATCACTCGTCAACTTA
LOC_Os05g36920
Os.4894.1.S1_a_at--981--9391Chr05:21478666..21478690 (25 bp)
TCGTCAACTTACTGCCTACAGCAAT
LOC_Os05g36920
Os.4894.1.S1_a_at--765--9911Chr05:21478657..21478681 (25 bp)
TACTGCCTACAGCAATACTGGAAGG
LOC_Os05g36920
Target Sequence 
AGCCACCTGTATTATATAAGCGCACCAGTTCCAAGTCTGAAACCAAGTGCCAAGTCTGAATTATTGTCTAGCAAGGAATG
CTACCTGCTGCCACATCACTCGTCAACTTACTGCCTACAGCAATACTGGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4894.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis