Browse Element(s) Details


Os.49006.1.S1_at

Description gb:AK111478.1
DB_XREF= gi:32996691
TID=Os.49006.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-185-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A09, full insert sequence.
FL= gb:AK111478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3146611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31442OsAffx.27239.2.S1_at11/119+18936373..18937979hypothetical protein
LOC_Os09g31442Os.57198.1.S1_at1/119+18936373..18937979hypothetical protein
LOC_Os09g31446Os.52093.1.S1_at11/119+18943434..18945190expressed protein
LOC_Os09g31450OsAffx.17978.1.S1_at11/119+18949084..18950277Leucine Rich Repeat family protein, expressed
LOC_Os09g31454Os.55570.1.S1_x_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.55570.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.6840.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31458Os.17670.1.S1_at6/119+18956647..18958390expressed protein
LOC_Os09g31462NANA9+18959794..18960195hypothetical protein
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed
LOC_Os09g31474NANA9+18975630..18976825hypothetical protein
LOC_Os09g31478Os.23143.1.S1_at11/119+18977136..18982481Auxin Efflux Carrier family protein, expressed
LOC_Os09g31482Os.4530.1.S1_at11/119+18984507..18986195Splicing factor U2af 38 kDa subunit, putative, expressed
LOC_Os09g31486Os.25736.1.S1_at11/119+18986949..18990156Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49006.1.S1_at--1145--2331Chr09:18961388..18961412 (25 bp)
AAAGAGCGTGCTCATGGGCACTGCT
LOC_Os09g31466
Os.49006.1.S1_at--126--411Chr09:18961359..18961383 (25 bp)
ATCAGGACAACCAAGACGGTGCCCT
LOC_Os09g31466
Os.49006.1.S1_at--331--2631Chr09:18961351..18961375 (25 bp)
AACCAAGACGGTGCCCTCGAGATCA
LOC_Os09g31466
Os.49006.1.S1_at--585--4271Chr09:18961337..18961361 (25 bp)
CCTCGAGATCACTGTTAGCGGTGAA
LOC_Os09g31466
Os.49006.1.S1_at--5--5511Chr09:18961315..18961339 (25 bp)
GAAAAGTACAGGTGCCTTCGTTTCT
LOC_Os09g31466
Os.49006.1.S1_at--40--7791Chr09:18961305..18961329 (25 bp)
GGTGCCTTCGTTTCTCTAAGGCAAA
LOC_Os09g31466
Os.49006.1.S1_at--166--6051Chr09:18961275..18961299 (25 bp)
GAGATATGAACTTAGGCATCGAGAA
LOC_Os09g31466
Os.49006.1.S1_at--875--4971Chr09:18961260..18961284 (25 bp)
GCATCGAGAAGTAGTTGTGTAAGAC
LOC_Os09g31466
Os.49006.1.S1_at--1136--6551Chr09:18961194..18961218 (25 bp)
GATTCTTTTGTACAGGGAATTCTGA
LOC_Os09g31466
Os.49006.1.S1_at--354--3471Chr09:18961182..18961206 (25 bp)
CAGGGAATTCTGAAACGTGCGTAAA
LOC_Os09g31466
Os.49006.1.S1_at--415--8971Chr09:18961172..18961196 (25 bp)
TGAAACGTGCGTAAACTCAGTAAAA
LOC_Os09g31466
Target Sequence 
AAAGAGCGTGCTCATGGGCACTGCTTNGAATCAGGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGT
ACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCA
TGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAACTCAGTAAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis