Browse Element(s) Details


Os.4905.1.S1_a_at

Description gb:AK065131.1
DB_XREF= gi:32975149
TID=Os.4905.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.4905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.25 (P0446G04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full insert sequence.
FL= gb:AK065131.1 gb:AK098922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0901011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08970Os.7840.1.S1_at11/111+4494521..4501188Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os01g08980OsAffx.10931.2.S1_s_at9/111+4501422..4501862hypothetical protein
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4905.1.S1_a_at--27--1211Chr01:4529119..4529143 (25 bp)
AGTTCTTCCAGTTCGCCAAGGAGGA
LOC_Os01g09010
Os.4905.1.S1_a_at--13--1411Chr01:4529143..4529167 (25 bp)
AGACGGAGCAGGACCCGTTCCAGAT
LOC_Os01g09010
Os.4905.1.S1_a_at--981--6751Chr01:4529171..4529195 (25 bp)
GTTCAACTACGAGTCCATCTACGTC
LOC_Os01g09010
Os.4905.1.S1_a_at--434--451Chr01:4529187..4529211 (25 bp)
ATCTACGTCTCCGACTGGAGCAAGC
LOC_Os01g09010
Os.4905.1.S1_a_at--404--3831Chr01:4529345..4529369 (25 bp)
CTGCGTCACCAAGGAACACTCGGAG
LOC_Os01g09010
Os.4905.1.S1_a_at--959--5471Chr01:4529358..4529382 (25 bp)
GAACACTCGGAGGAGTTCGTCCGCG
LOC_Os01g09010
Os.4905.1.S1_a_at--861--8011Chr01:4529390..4529414 (25 bp)
GGAGGACCTGCCATGAACTGAGCAA
LOC_Os01g09010
Os.4905.1.S1_a_at--574--3671Chr01:4529436..4529460 (25 bp)
CTTTTGTTACTTGAAGCTGCTGCTT
LOC_Os01g09010
Os.4905.1.S1_a_at--853--4771Chr01:4529451..4529475 (25 bp)
GCTGCTGCTTGTGAGCTGAAGTGAA
LOC_Os01g09010
Os.4905.1.S1_a_at--1055--10451Chr01:4529564..4529588 (25 bp)
TTACTCTTGGTTAATACGGATTCGA
LOC_Os01g09010
Os.4905.1.S1_a_at--1119--1911Chr01:4529579..4529603 (25 bp)
ACGGATTCGAGTTATGTTCTTAGAC
LOC_Os01g09010
Target Sequence 
AGTTCTTCCAGTTCGCCAAGGAGGAGACGGAGCAGGACCCGTTCCAGATGACGTTCAACTACGAGTCCATCTACGTCTCC
GACTGGAGCAAGCTCGGGTTCGCCGAGGTGGACTACGGCTTCGGCCCGCCCAAGTTCGCCGGCCCGCTCGTCAACAACGA
CTTCATCGCCTCCGTCGTCATCCTCAAGGCGCCGCTGCCGCTCGACGGCACGCGGATGCTCGCCAGCTGCGTCACCAAGG
AACACTCGGAGGAGTTCGTCCGCGGCATGAAGGAGGACCTGCCATGAACTGAGCAAATGAGGTGATGAGCTTTTTTTCTT
TTGTTACTTGAAGCTGCTGCTTGTGAGCTGAAGTGAAGGGCTTCTTCTAATAGGGAGGGGAACACATGCTGGTGAAAAAT
GATGTTGTTGTAAGAGGCGTATTTTGTTTGTATTTATTTGTTTCTTTACTCTTGGTTAATACGGATTCGAGTTATGTTCT
TAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4905.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis