Browse Element(s) Details


Os.49054.1.S1_at

Description gb:AK107298.1
DB_XREF= gi:32992507
TID=Os.49054.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C06, full insert sequence.
FL= gb:AK107298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3135010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified
LOC_Os04g31390Os.52415.1.S1_at11/114+18583326..18588735Vacuolar protein sorting 11, putative, expressed
LOC_Os04g31400OsAffx.3965.1.S1_at11/114+18592234..18595932expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49054.1.S1_at--249--1311Chr04:18570630..18570654 (25 bp)
AGAGGAGCGCCTAAGTTCATACCCA
LOC_Os04g31350
Os.49054.1.S1_at--683--9591Chr04:18570614..18570638 (25 bp)
TCATACCCAGATCGCCAAACTTTTT
LOC_Os04g31350
Os.49054.1.S1_at--747--2391Chr04:18570598..18570622 (25 bp)
AAACTTTTTGGCTCACTGTGCATGG
LOC_Os04g31350
Os.49054.1.S1_at--756--10231Chr04:18570592..18570616 (25 bp)
TTTGGCTCACTGTGCATGGTGAAGA
LOC_Os04g31350
Os.49054.1.S1_at--196--9851Chr04:18570517..18570541 (25 bp)
TACACACACAACTTGGTGACTTTTG
LOC_Os04g31350
Os.49054.1.S1_at--438--7371Chr04:18570502..18570526 (25 bp)
GTGACTTTTGATCCATGCACGCATG
LOC_Os04g31350
Os.49054.1.S1_at--28--3531Chr04:18570489..18570513 (25 bp)
CATGCACGCATGTAAGTAGAGAGAA
LOC_Os04g31350
Os.49054.1.S1_at--330--9891Chr04:18570421..18570445 (25 bp)
TACTTTACTTAATTAGGGAGCAGCT
LOC_Os04g31350
Os.49054.1.S1_at--13--5951Chr04:18570404..18570428 (25 bp)
GAGCAGCTGCTCATGTACTTTATAA
LOC_Os04g31350
Os.49054.1.S1_at--602--10471Chr04:18570378..18570402 (25 bp)
TTACTTGTCTTGTTCTTTAGTTCTT
LOC_Os04g31350
Os.49054.1.S1_at--590--6151NONE
GAGGTATATTGTTAAGCTTCCAAGA
NONE
Target Sequence 
AGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTT
TACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAG
AGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCACTACTTTACTTAATTAGGGAGCAGCTGCTCAT
GTACTTTATAATTTACTTGTCTTGTTCTTTAGTTCTTTTGATCAGGGGGAGGTATATTGTTAAGCTTCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis