Browse Element(s) Details


Os.49089.1.S1_at

Description gb:AK060342.1
DB_XREF= gi:32970360
TID=Os.49089.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-D06, full insert sequence.
FL= gb:AK060342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g376009/11anion transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37570Os.24695.1.A1_at11/118+23660898..23663606U-box domain containing protein, expressed
LOC_Os08g37580Os.28034.1.S1_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37580Os.52596.1.S1_x_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37590OsAffx.29572.1.S1_at11/118+23675029..23676321expressed protein
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0015743biological_processmalate transport
GO:0015367molecular_functionoxoglutarate:malate antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49089.1.S1_at--1138--10171Chr08:23688361..23688385 (25 bp)
TATACTGTCGGCACTTGCTTTGACA
LOC_Os08g37600
Os.49089.1.S1_at--691--2271Chr08:23688328..23688352 (25 bp)
AAATCTCTTTGGTGCACTGACACAT
LOC_Os08g37600
Os.49089.1.S1_at--1151--9851Chr08:23687745..23687769 (25 bp)
TACACCTGTAATTCATGGCTCCCTT
LOC_Os08g37600
Os.49089.1.S1_at--897--851Chr08:23687731..23687755 (25 bp)
ATGGCTCCCTTTCTGGAGTGGTAGT
LOC_Os08g37600
Os.49089.1.S1_at--255--6131Chr08:23687716..23687740 (25 bp)
GAGTGGTAGTCATTTTTTCTTCAGA
LOC_Os08g37600
Os.49089.1.S1_at--1101--8151Chr08:23687667..23687691 (25 bp)
GGAACGATGTTCCTCATTAGAAGTC
LOC_Os08g37600
Os.49089.1.S1_at--436--6471Chr08:23687634..23687658 (25 bp)
GATACACTTGTACAACCCAGAAGGG
LOC_Os08g37600
Os.49089.1.S1_at--93--1071Chr08:23687613..23687637 (25 bp)
AGGGTTCTCATAGGCGTTTTGTACA
LOC_Os08g37600
Os.49089.1.S1_at--299--10391Chr08:23687597..23687621 (25 bp)
TTTTGTACAACTCCCATGCATTTCT
LOC_Os08g37600
Os.49089.1.S1_at--432--2011Chr08:23687515..23687539 (25 bp)
ACTCTCGGAACTGTATGGATTGCTT
NONE
Os.49089.1.S1_at--471--6591Chr08:23687498..23687522 (25 bp)
GATTGCTTTTGCTATATGCCGTGAT
NONE
Target Sequence 
TATACTGTCGGCACTTGCTTTGACATACNATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGNCAGTCTGCAG
TATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTCAAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATA
TGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCNAAAGTGT
TCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATA
ATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTG
TACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCNNATTGTTCATGTACT
CTCGGAACTGTATGGATTGCTTTTGCTATATGCCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis