Browse Element(s) Details


Os.49102.1.S1_x_at

Description gb:AK110935.1
DB_XREF= gi:32996144
TID=Os.49102.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G03, full insert sequence.
FL= gb:AK110935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0769011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49102.1.S1_x_at--619--8491Chr07:3859249..3859273 (25 bp)
TGGTGTTTTAAAGCTCCTCCCAAAG
LOC_Os07g07690
Os.49102.1.S1_x_at--790--8151Chr07:3859291..3859315 (25 bp)
GGAAACCAGTGATGGCAATCCTCGA
LOC_Os07g07690
Os.49102.1.S1_x_at--288--8231Chr07:3859304..3859328 (25 bp)
GGCAATCCTCGAAGCAAGAACACTA
LOC_Os07g07690
Os.49102.1.S1_x_at--24--7631Chr07:3859338..3859362 (25 bp)
GGGAAACCAGTGACGCCAAGATTCT
LOC_Os07g07690
Os.49102.1.S1_x_at--1156--2511Chr07:3859432..3859456 (25 bp)
AACTAGCGCTGGCAAGATTTTGTCC
LOC_Os07g07690
Os.49102.1.S1_x_at--1146--5511Chr07:3859477..3859501 (25 bp)
GAAAACCAGCGATGTCTGTAGACAA
LOC_Os07g07690
Os.49102.1.S1_x_at--39--2371Chr07:3859512..3859536 (25 bp)
AAAGCGATGCAATTGATGTGTCCCA
LOC_Os07g07690
Os.49102.1.S1_x_at--491--10051Chr07:3859617..3859641 (25 bp)
TAGTGGGAATTTCTTTGGGCCAGAA
LOC_Os07g07690
Os.49102.1.S1_x_at--484--8391Chr07:3859663..3859687 (25 bp)
GGCGCAACTGAAGATATCCTCACTA
LOC_Os07g07690
Os.49102.1.S1_x_at--272--9191Chr07:3859795..3859819 (25 bp)
TGCCATTGATCAGGATACATCTCGT
LOC_Os07g07690
Os.49102.1.S1_x_at--68--9891Chr07:3859810..3859834 (25 bp)
TACATCTCGTCCTTCTCTTGAGAAG
LOC_Os07g07690
Target Sequence 
TGGTGTTTTAAAGCTCCTCCCAAAGAACAATAAGGTGGCCAAGGAAACCAGTGATGGCAATCCTCGAAGCAAGAACACTA
AGGTGGTTGGGGAAACCAGTGACGCCAAGATTCTGATGAAGAACAAGGCGAATAGGGAAAGTGGTGATGATAAGGCACCG
AAGAACTGTACGGTGAATCTAGAAACTAGCGCTGGCAAGATTTTGTCCAGAAACACTAAGGAAGATTTGAAAACCAGCGA
TGTCTGTAGACAAGATAAGGAGAAAAGCGATGCAATTGATGTGTCCCAAAAACAGGGTGCAGATGGTGAGAAGAGAATCA
CAGAAAAACTAGTCTCCCCCATCCTATTGAGGAAAAGTGACCCAAGTGTAGTGGGAATTTCTTTGGGCCAGAAAATGAAG
CAGCAAAATTCAAAGGCGCAACTGAAGATATCCTCACTAGGCCAACGNCNNNCTNNACTTAATTTGAAAGATGAGAAGAA
TAAGAAAAAAAGATTGCTTGATCATAAAATGTCACCAGAAAATTTGTCCAAGAAAGCAAAACCAAATGCCATTGATCAGG
ATACATCTCGTCCTTCTCTTGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis