Browse Element(s) Details


Os.49117.1.S1_at

Description gb:AK108703.1
DB_XREF= gi:32993912
TID=Os.49117.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A01, full insert sequence.
FL= gb:AK108703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4883011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48780Os.43764.1.A1_at6/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.2.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.7.S1_x_at3/114+28880118..28882370Transposase, putative
LOC_Os04g48780OsAffx.24046.3.S1_x_at1/114+28880118..28882370Transposase, putative
LOC_Os04g48790Os.25240.1.S1_at11/114+28886945..28890492rac GTPase activating protein 2, putative, expressed
LOC_Os04g48800Os.17990.1.S1_at11/114+28890997..28893724GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g48810NANA4+28894151..28894492hypothetical protein
LOC_Os04g48820Os.51199.1.S1_at11/114+28896478..28900555tatD-related deoxyribonuclease family protein, putative, expressed
LOC_Os04g48830Os.49117.1.S1_at11/114+28902762..28903995uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49117.1.S1_at--900--5611Chr04:28903478..28903502 (25 bp)
GACAAAGGCGGCAGCAAAGAAGACA
LOC_Os04g48830
Os.49117.1.S1_at--897--1451Chr04:28903495..28903519 (25 bp)
AGAAGACAGCAAGCACTGTCCGCCA
LOC_Os04g48830
Os.49117.1.S1_at--313--4711Chr04:28903525..28903549 (25 bp)
GCAGGCGCCGAAGCACCGGAAAACG
LOC_Os04g48830
Os.49117.1.S1_at--291--5391Chr04:28903534..28903558 (25 bp)
GAAGCACCGGAAAACGAAGAGCTGC
LOC_Os04g48830
Os.49117.1.S1_at--1054--7731Chr04:28903606..28903630 (25 bp)
GGTGGTGAAACAGTCCGAGGACCCA
LOC_Os04g48830
Os.49117.1.S1_at--252--8971Chr04:28903611..28903635 (25 bp)
TGAAACAGTCCGAGGACCCACGCGG
LOC_Os04g48830
Os.49117.1.S1_at--1108--2491Chr04:28903658..28903682 (25 bp)
AACATGATCGTGGAGAACCGCATCG
LOC_Os04g48830
Os.49117.1.S1_at--1014--6391Chr04:28903663..28903687 (25 bp)
GATCGTGGAGAACCGCATCGTGACC
LOC_Os04g48830
Os.49117.1.S1_at--210--5451Chr04:28903672..28903696 (25 bp)
GAACCGCATCGTGACCGGCGACGAG
LOC_Os04g48830
Os.49117.1.S1_at--852--7251Chr04:28903954..28903978 (25 bp)
GTCCAAGAAATTCTCGGCCTCATCT
LOC_Os04g48830
Os.49117.1.S1_at--1044--9451Chr04:28903967..28903991 (25 bp)
TCGGCCTCATCTGATCACGTATCTA
LOC_Os04g48830
Target Sequence 
GACAAAGGCGGCAGCAAAGAAGACAGCAAGCACTGTCCGCCACCACCGCAGGCGCCGAAGCACCGGAAAACGAAGAGCTG
CGACAACAACGANNNNNNNNNNNNCNGNNANNTCGACGGGAGCTTGGCGGTGGTGAAACAGTCCGAGGACCCACGCGGNG
ACTTCCNGGCGGTCGANTGCTNAACATGATCGTGGAGAACCGCATCGTGACCGGCGACGAGCTCCGGGAGCTGCTCCACC
GCTTCCTCGAGCTGAACGCGCCGCACCACCACGACGCCATCCTCCGGGCCTTCGCCGAGATCTGGGACGAGGTGTTCGCC
GGGCCGGACGAGCCCCGTCACGGTCCCCCGAGGCCGCCGNCCCGGCAGAGAACGCCACCTCGCCGNCGGCACCCTCTACC
GGCTTGGCGCCTGTAGTAACCNCACACATGGATACTTACCGCGTAGTATGTACAATGTAGATTACTGTACTAGGTTGCGT
CCAAGAAATTCTCGGCCTCATCTGATCACGTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis