Browse Element(s) Details


Os.49196.1.S1_at

Description gb:AK068966.1
DB_XREF= gi:32978990
TID=Os.49196.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170C17, full insert sequence.
FL= gb:AK068966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12510OsAffx.4812.1.S1_at11/116+6789517..6791070pentatricopeptide, putative
LOC_Os06g12520OsAffx.4813.1.S1_at11/116+6792121..6792388hypothetical protein
LOC_Os06g12530Os.14007.1.S1_at11/116+6793152..6795998Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540Os.50302.1.S1_at11/116+6795507..6797469pentatricopeptide, putative, expressed
LOC_Os06g12550OsAffx.4814.1.S1_at11/116+6800972..6801358hypothetical protein
LOC_Os06g12560OsAffx.28216.1.S1_at11/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12560Os.46458.2.S1_at2/116+6807877..6810728Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12570OsAffx.4815.1.S1_at11/116+6813709..6814191hypothetical protein
LOC_Os06g12580Os.49196.1.S1_at11/116+6815407..6818817expressed protein
LOC_Os06g12580Os.10184.1.S1_s_at11/116+6815407..6818817expressed protein
LOC_Os06g12590Os.14975.1.S2_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.14975.1.S1_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.12612.1.S1_at1/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12600Os.27745.1.A1_at11/116+6841981..6847490Fructokinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49196.1.S1_at--682--171Chr06:6815970..6815994 (25 bp)
ATTTTTTCAGAACCACTTGTTAGAT
LOC_Os06g12580
Os.49196.1.S1_at--16--8591Chr06:6815930..6815954 (25 bp)
TGGTTCTGTAACTAATTTTCTGATG
LOC_Os06g12580
Os.49196.1.S1_at--1162--971Chr06:6815905..6815929 (25 bp)
AGGATGCAAATTTCATAGGCTCAGA
LOC_Os06g12580
Os.49196.1.S1_at--352--8311Chr06:6815888..6815912 (25 bp)
GGCTCAGAAGAGCATTTGCCATTGT
LOC_Os06g12580
Os.49196.1.S1_at--999--9191Chr06:6815872..6815896 (25 bp)
TGCCATTGTGCTTCTGTTGTGCAGA
LOC_Os06g12580
Os.49196.1.S1_at--560--10831Chr06:6815856..6815880 (25 bp)
TTGTGCAGAGCTGTTCTAATGTATC
LOC_Os06g12580
Os.49196.1.S1_at--492--5891Chr06:6815849..6815873 (25 bp)
GAGCTGTTCTAATGTATCTTCAATG
LOC_Os06g12580
Os.49196.1.S1_at--890--3191Chr06:6815829..6815853 (25 bp)
CAATGTAGACTTTACACCGGAGGAT
LOC_Os06g12580
Os.49196.1.S1_at--762--1311Chr06:6815797..6815821 (25 bp)
AGATGGTTTCTATTCCGTGCTAAGT
LOC_Os06g12580
Os.49196.1.S1_at--494--3991Chr06:6815782..6815806 (25 bp)
CGTGCTAAGTAGTTCATGCTGTCTT
LOC_Os06g12580
Os.49196.1.S1_at--103--1231Chr06:6815772..6815796 (25 bp)
AGTTCATGCTGTCTTTTTGTAGGAT
LOC_Os06g12580
Target Sequence 
ATTTTTTCAGAACCACTTGTTAGATTTATAGTATATTGTATGGTTCTGTAACTAATTTTCTGATGAGGATGCAAATTTCA
TAGGCTCAGAAGAGCATTTGCCATTGTGCTTCTGTTGTGCAGAGCTGTTCTAATGTATCTTCAATGTAGACTTTACACCG
GAGGATGAGAAGTAGATGGTTTCTATTCCGTGCTAAGTAGTTCATGCTGTCTTTTTGTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis