Browse Element(s) Details


Os.4921.1.S1_at

Description gb:AK107929.1
DB_XREF= gi:32993138
TID=Os.4921.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H12, full insert sequence.
FL= gb:AK107929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12050NANA12+6602070..6605019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12060NANA12+6607455..6608453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12070OsAffx.19621.1.S1_at11/1112+6609284..6609814hypothetical protein
LOC_Os12g12080Os.40001.1.A1_at9/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.16205.1.S1_at2/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.512.1.S1_x_at1/1112+6609704..6623597expressed protein
LOC_Os12g12090Os.4921.1.S1_at11/1112+6624346..6624930expressed protein
LOC_Os12g12100NANA12+6627865..6628454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12110OsAffx.31708.1.S1_at9/1112+6639548..6642074hypothetical protein
LOC_Os12g12120OsAffx.31705.2.S1_at4/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12120OsAffx.27330.1.S1_s_at1/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12130Os.28949.1.S1_at11/1112+6649801..6653129Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4921.1.S1_at--646--1811Chr12:6624392..6624416 (25 bp)
ACGCCGGAGTTCGTTCACAAGTTCT
LOC_Os12g12090
Os.4921.1.S1_at--894--9391Chr12:6624402..6624426 (25 bp)
TCGTTCACAAGTTCTCGCCGGTGAG
LOC_Os12g12090
Os.4921.1.S1_at--64--7391Chr12:6624422..6624446 (25 bp)
GTGAGCCTGCGTTCGATGTTGAAAA
LOC_Os12g12090
Os.4921.1.S1_at--286--7311Chr12:6624500..6624524 (25 bp)
GTGCTCCTCCTGATGATCGCCTACG
LOC_Os12g12090
Os.4921.1.S1_at--1146--9311Chr12:6624516..6624540 (25 bp)
TCGCCTACGGCGTGGCCCGGAACGA
LOC_Os12g12090
Os.4921.1.S1_at--1069--551Chr12:6624578..6624602 (25 bp)
ATGCCTCGCCAACAAGACGGCGCGA
LOC_Os12g12090
Os.4921.1.S1_at--1152--1391Chr12:6624592..6624616 (25 bp)
AGACGGCGCGACAACTCCAAATCGG
LOC_Os12g12090
Os.4921.1.S1_at--155--2171Chr12:6624602..6624626 (25 bp)
ACAACTCCAAATCGGCGTTCCTTAT
LOC_Os12g12090
Os.4921.1.S1_at--657--10191Chr12:6624779..6624803 (25 bp)
TATATTAACGTGTTGTGTCATACTA
LOC_Os12g12090
Os.4921.1.S1_at--923--7091Chr12:6624805..6624829 (25 bp)
GTCAGAATTTACAAGCTAGCCTACT
LOC_Os12g12090
Os.4921.1.S1_at--570--4591Chr12:6624819..6624843 (25 bp)
GCTAGCCTACTACTCCTTCCGTTTT
LOC_Os12g12090
Target Sequence 
ACGCCGGAGTTCGTTCACAAGTTCTCGCCGGTGAGCCTGCGTTCGATGTTGAAAAGACGAGGAGTGGCTGCGCAGCAGCG
GGCGCCGGAAGCGATGGTTCTGGCGGCGGTGCTCCTCCTGATGATCGCCTACGGCGTGGCCCGGAACGAGGCGGCGGTGC
CCGACTCCAGTCTCTCCTGCCTCTCCATGCCTCGCCAACAAGACGGCGCGACAACTCCAAATCGGCGTTCCTTATCCGTG
CACCCGTCGTGCTGCACTANTANCCCCCCGCCGAGCTGNTATAAACCTCAACCCTGCCCACCGTCCTAATCGACCGAAAA
GGCCAAAATATATACATACACAAAANGTTACCATATATATTTCAANGATCGGTGGAANGTACTTACAATATATATTAACG
TGTTGTGTCATACTATGTCAGAATTTACAAGCTAGCCTACTACTCCTTCCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis