Browse Element(s) Details


Os.49224.1.S1_at

Description gb:AK109055.1
DB_XREF= gi:32994264
TID=Os.49224.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E09, full insert sequence.
FL= gb:AK109055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0555011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05580Os.4779.1.S1_at11/117+2612231..261462340S ribosomal protein S12, putative, expressed
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49224.1.S1_at--890--2091Chr07:2594783..2594807 (25 bp)
ACATGACGTTCGTGGACGGCGTGAC
LOC_Os07g05550
Os.49224.1.S1_at--1103--8391Chr07:2594553..2594577 (25 bp)
GGCGCCGGAACCATCATCAAGAGAA
LOC_Os07g05550
Os.49224.1.S1_at--706--6431Chr07:2594416..2594440 (25 bp)
GATCATGCAAGTTCCTGGCATCCGA
LOC_Os07g05550
Os.49224.1.S1_at--961--2811Chr07:2594317..2594432 (25 bp)
AAGTTCCTGGCATCCGAGACATCTG
LOC_Os07g05550
Os.49224.1.S1_at--62--5991Chr07:2594302..2594324 (23 bp)
GAGACATCTGCTGCATCAGCACTGA
LOC_Os07g05550
Os.49224.1.S1_at--213--4971Chr07:2594290..2594314 (25 bp)
GCATCAGCACTGACTCGAGGAAGCA
LOC_Os07g05550
Os.49224.1.S1_at--525--5071Chr07:2594251..2594275 (25 bp)
GCAGCTGCGTCTATGATGTTTCTTC
LOC_Os07g05550
Os.49224.1.S1_at--752--471Chr07:2594226..2594250 (25 bp)
ATCTGAGAGTTTTCCAATCCGTGTG
LOC_Os07g05550
Os.49224.1.S1_at--1048--551Chr07:2594210..2594234 (25 bp)
ATCCGTGTGAATTGGGTCGATGCTA
LOC_Os07g05550
Os.49224.1.S1_at--229--10031Chr07:2594175..2594199 (25 bp)
TAGTACCTGTGGTGGTTTGGTTCTC
LOC_Os07g05550
Os.49224.1.S1_at--1072--7491Chr07:2594164..2594188 (25 bp)
GTGGTTTGGTTCTCTTTGTAGTATA
LOC_Os07g05550
Target Sequence 
ACATGACGTTCGTGGACGGCGTGACGTGGTGCGTGGCGCGGCCGGGGGTGTCACAGGAGGACCTCCAGAACGCGCTGGAC
TGGGCGTGCNGNCNNNGNNGNNNNNGACTGCACNCNGNTGCAACCCGGTGNTCGGTNCTACCAGCCGGACACCCTCCTCT
NCCACGCCTCCTACGCCTTCAACATCTTCTACCAGCAGAACNGGCAACTCCGACATCGCCTGCAACTTCNGGTGGCGCCG
GAACCATCATCAAGAGAAATCCAAGTTTNGGATCATGCAAGTTCCTGGCATCCGAGACATCTGCTGCATCAGCACTGACT
CGAGGAAGCATNGTGGNNNATNGNTCTTCGCAGCTGCGTCTATGATGTTTCTTCATCTGAGAGTTTTCCAATCCGTGTGA
ATTGGGTCGATGCTANCAAAGTAATTAGTACCTGTGGTGGTTTGGTTCTCTTTGTAGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis