Browse Element(s) Details


Os.49230.1.S1_at

Description gb:AK101118.1
DB_XREF= gi:32986327
TID=Os.49230.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025H22, full insert sequence.
FL= gb:AK072057.1 gb:AK101118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0445011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04420OsAffx.12731.1.S1_at11/113+2020097..2021140hypothetical protein
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed
LOC_Os03g04440Os.6973.1.S1_at11/113+2038421..2042351expressed protein
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49230.1.S1_at--285--9551Chr03:2046412..2046436 (25 bp)
TCTTTGCAGTCCAAGGTGATCCTAT
LOC_Os03g04450
Os.49230.1.S1_at--415--6371Chr03:2046429..2046453 (25 bp)
GATCCTATGAAGCTACAGGCAATAT
LOC_Os03g04450
Os.49230.1.S1_at--155--7151Chr03:2046471..2046495 (25 bp)
GTCTTTTATAAATTGCTGCCCTCTA
LOC_Os03g04450
Os.49230.1.S1_at--344--9111Chr03:2046484..2046508 (25 bp)
TGCTGCCCTCTAGAAGTGATCGCTT
LOC_Os03g04450
Os.49230.1.S1_at--196--9211Chr03:2046508..2046532 (25 bp)
TCCAGCCATCCTTGTTGGAAGGGAT
LOC_Os03g04450
Os.49230.1.S1_at--411--5191Chr03:2046573..2046597 (25 bp)
GAAGTTTTTTCACAACCTGACCTGG
LOC_Os03g04450
Os.49230.1.S1_at--462--2631Chr03:2046586..2046610 (25 bp)
AACCTGACCTGGATTGGAGCCTGTA
LOC_Os03g04450
Os.49230.1.S1_at--193--8091Chr03:2046601..2046625 (25 bp)
GGAGCCTGTATCAATCCTGAAGAAA
LOC_Os03g04450
Os.49230.1.S1_at--1058--6791Chr03:2046653..2046677 (25 bp)
GTTATTTCTTATCTCTTTCACCTGA
LOC_Os03g04450
Os.49230.1.S1_at--377--1551Chr03:2046677..2046701 (25 bp)
AGCTTTTCATTGTACCACTCTTGAC
LOC_Os03g04450
Os.49230.1.S1_at--151--1011Chr03:2046719..2046743 (25 bp)
AGGTAACTCTTTTGGCTTCTAGCTG
LOC_Os03g04450
Target Sequence 
TCTTTGCAGTCCAAGGTGATCCTATGAAGCTACAGGCAATATGTACTCTTAGTTTGTTAGTCTTTTATAAATTGCTGCCC
TCTAGAAGTGATCGCTTCCAGCCATCCTTGTTGGAAGGGATGCAGACAGTTAATAGCTTTGTAGATGGTCCAACAGATTA
TGAAGTTTTTTCACAACCTGACCTGGATTGGAGCCTGTATCAATCCTGAAGAAAATTTCAAGGTCAATACACACTTGTTT
AGTTATTTCTTATCTCTTTCACCTGAGCTTTTCATTGTACCACTCTTGACCTTTTGTACAGTTACATAGGTAACTCTTTT
GGCTTCTAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis