Browse Element(s) Details


Os.49268.1.S1_at

Description gb:AK069567.1
DB_XREF= gi:32979591
TID=Os.49268.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021M06, full insert sequence.
FL= gb:AK069567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3655011/11DNA/pantothenate metabolism flavoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49268.1.S1_at--863--3431Chr02:22062823..22062847 (25 bp)
CAGTGTTGCGAAACCAATGGGCCCC
LOC_Os02g36550
Os.49268.1.S1_at--29--4211Chr02:22062801..22062825 (25 bp)
CCCCTTGGCGTTCTGTATATCATTT
LOC_Os02g36550
Os.49268.1.S1_at--254--5751Chr02:22062655..22062679 (25 bp)
GACGGATTCGGACATCCTTATTCAG
LOC_Os02g36550
Os.49268.1.S1_at--729--512Chr06:29747837..29747857 (21 bp)
ATCGTTGTGGCCAATTTGCTTGCAA
NONE
Os.49268.1.S1_at--1102--3071Chr02:22062462..22062486 (25 bp)
AATCACTCGAAGTACATATGCGGAA
LOC_Os02g36550
Os.49268.1.S1_at--96--7791Chr02:22062428..22062452 (25 bp)
GGTGCGTCCAGAGCCCATATTGAAT
LOC_Os02g36550
Os.49268.1.S1_at--232--5191Chr02:22062407..22062431 (25 bp)
GAATTGCGGGAATCTGTACTGTACC
LOC_Os02g36550
Os.49268.1.S1_at--821--6991Chr02:22062392..22062416 (25 bp)
GTACTGTACCGTTTCACATTAGAGG
LOC_Os02g36550
Os.49268.1.S1_at--338--10271Chr02:22062340..22062364 (25 bp)
TTTGATTTGCTTTCTGGGCGTTGAA
LOC_Os02g36550
Os.49268.1.S1_at--1111--7831Chr02:22062245..22062269 (25 bp)
GGTACACAAACAGCATCACTTTTTT
LOC_Os02g36550
Os.49268.1.S1_at--1044--5331Chr02:22062189..22062213 (25 bp)
GAAGTTAACAGCGACAGCCCCAAAT
LOC_Os02g36550
Target Sequence 
CAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTNGGAGACGGATTCGGACATCCTTATTCAG
AAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCAT
TATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCC
TATCACANAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGT
ACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAA
AAGAAAGCCCNACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCNGATAGGTACACAAACAGCA
TCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis