Browse Element(s) Details

Os.49281.1.S1_s_at

Description

gb:AK062457.1
DB_XREF= gi:32972475
TID=Os.49281.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C11, full insert sequence.
FL= gb:AK062964.1 gb:AK062457.1 gb:AK104925.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21240	11/11	Glycine rich protein family protein, expressed
LOC_Os06g21230	1/11	Glycine rich protein family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21220	NA	NA	6	+	12260391..12261979	Glycine rich protein family protein
LOC_Os06g21230	Os.49281.1.S1_s_at	1/11	6	+	12272482..12273085	Glycine rich protein family protein
LOC_Os06g21240	Os.49281.1.S1_at	11/11	6	+	12278982..12280402	Glycine rich protein family protein, expressed
LOC_Os06g21240	Os.49281.1.S1_s_at	11/11	6	+	12278982..12280402	Glycine rich protein family protein, expressed
LOC_Os06g21240	Os.10370.1.S1_x_at	1/11	6	+	12278982..12280402	Glycine rich protein family protein, expressed
LOC_Os06g21250	OsAffx.27747.1.S1_at	11/11	6	+	12286613..12287832	Glycine rich protein family protein, expressed
LOC_Os06g21260	OsAffx.25574.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21260	Os.27255.2.S1_x_at	1/11	6	+	12291025..12295851	retrotransposon protein, putative, unclassified
LOC_Os06g21270	Os.49289.1.S1_x_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21270	Os.49289.1.S1_at	11/11	6	+	12297047..12297983	Glycine rich protein family protein, expressed
LOC_Os06g21280	Os.26886.1.S1_x_at	9/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	Os.26886.3.S1_x_at	5/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g21280	OsAffx.16244.1.S1_x_at	1/11	6	+	12301241..12304583	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49281.1.S1_s_at--1156--1055	1	Chr06:12279070..12279094 (25 bp)	TTCTTCCTGGATGTAGCTCACGCAA	LOC_Os06g21240
Os.49281.1.S1_s_at--170--1065	2	Chr06:12279073..12279097 (25 bp)	TTCCTGGATGTAGCTCACGCAAGAG	LOC_Os06g21240
Os.49281.1.S1_s_at--130--529	1	Chr06:12279864..12279888 (25 bp)	GAATGTGAAGCCAACAGGTAGGTCA	LOC_Os06g21240
Os.49281.1.S1_s_at--1107--659	1	Chr06:12280187..12280211 (25 bp)	GTTGGCCTTAATAGGTATTCGAGTC	LOC_Os06g21240
Os.49281.1.S1_s_at--1034--9	1	Chr06:12280203..12280227 (25 bp)	ATTCGAGTCATCTAAGTACAACTGT	LOC_Os06g21240
Os.49281.1.S1_s_at--905--239	1	Chr06:12280247..12280271 (25 bp)	AAACTTGTTTGAGTATGCATGCTGC	LOC_Os06g21240
Os.49281.1.S1_s_at--289--691	1	Chr06:12280259..12280283 (25 bp)	GTATGCATGCTGCTAGTAGGAACAT	LOC_Os06g21240
Os.49281.1.S1_s_at--135--155	1	Chr06:12280308..12280332 (25 bp)	AGCATCATGTTTGGTCTCTTCTTAT	LOC_Os06g21240
Os.49281.1.S1_s_at--749--877	1	Chr06:12280315..12280339 (25 bp)	TGTTTGGTCTCTTCTTATATATGTA	LOC_Os06g21240
Os.49281.1.S1_s_at--1001--669	1	Chr06:12280341..12280365 (25 bp)	GTTCCTTCCAACATGTATTCTGGCT	LOC_Os06g21240
Os.49281.1.S1_s_at--137--251	1	Chr06:12280350..12280374 (25 bp)	AACATGTATTCTGGCTTTAAGCATA	LOC_Os06g21240

Target Sequence

TTCTTCCTGGATGTAGCTCACGCAAGAGAGCTCGCTGAAGCCAGTGAATCTGAGGGGAAGAATGTGAAGCCAACAGGTAG
GTCAGGGGTCGAGGATCAGAAGTGGGGCGGTGCTCATGGAGGAGGATATGGATATGGCGGCGGGTATGGTGGAGGAGGAT
ATGGTCATCCTGGGTATGGTGGTGGCTATGGTGGTGGATATGGCCACCCTGGATATGGCGGTGGCTACGGAGGTGGATAC
GGCCAAGGATATGGCTGTGGGTATGGTCATCCTGGTCACAGTGGAGGATATGGTGGTGGTTACGGAGGTGGTTATGGTGG
AGGATACGGTGGTGGGGGTGGCTACGGTGGTGGTGGAGGTTATGGAGGAGGACATGGTGGTGGTTGGCCTTAATAGGTAT
TCGAGTCATCTAAGTACAACTGTTAAATAAGTCAATTATGACAAACTTGTTTGAGTATGCATGCTGCTAGTAGGAACATT
GTATAGTAGCAAGAAACTAGAAGAGCATCATGTTTGGTCTCTTCTTATATATGTATGTTCCTTCCAACATGTATTCTGGC
TTTAAGCATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis