Browse Element(s) Details


Os.49292.2.S1_x_at

Description gb:AK069729.1
DB_XREF= gi:32979753
TID=Os.49292.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027J17, full insert sequence.
FL= gb:AK069729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g016841/11retrotransposon protein, putative, unclassified
LOC_Os08g342801/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01650Os.2402.1.S1_at11/113+379438..380626Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01700Os.18734.1.S1_at10/113+408839..411219transmembrane protein, putative, expressed
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49292.2.S1_x_at--351--391NONE
ATCACTCCCTCTTGCAGACATGGAT
NONE
Os.49292.2.S1_x_at--985--10731NONE
TTGCAGACATGGATCTTCACGCCAG
NONE
Os.49292.2.S1_x_at--456--451NONE
ATCTACGGGCGCTTGCCCTATAGGC
NONE
Os.49292.2.S1_x_at--223--891Chr08:21379655..21379990 (25 bp)
AGGCCGGCACGGTGCTAGCTAGCTA
LOC_Os08g34280
Os.49292.2.S1_x_at--884--3731NONE
CTAAGGCGAGGCATTCCGGGCAGTC
NONE
Os.49292.2.S1_x_at--716--3971NONE
CGGGCAGTCGTGGACCTAGCGCCAT
NONE
Os.49292.2.S1_x_at--861--3751Chr03:404877..404896 (20 bp)
CTCTCAGGGCTGCAACAATGACAAA
LOC_Os03g01684
Os.49292.2.S1_x_at--706--8971NONE
TGAAAAATGAGCTTCAAGCTGCCAG
NONE
Os.49292.2.S1_x_at--628--6093Chr09:10227526..10227550 (25 bp)
GAGTACATCTTTTGCAAGTCTTGAT
NONE
Os.49292.2.S1_x_at--138--2853Chr09:10227541..10227565 (25 bp)
AAGTCTTGATCTGTGCACCTCTTCA
NONE
Os.49292.2.S1_x_at--56--3771NONE
CTCTTCAGCTGGTTGCCAGCATGAA
NONE
Target Sequence 
ATCACTCCCTCTTGCAGACATGGATCTTCACGCCAGCGCCGCCACTCCCCCGTGCCCTCATCGCTGTGCCGCTCCGTCAC
CCTCTGCCCCTTCTGCTCACGGCTCACCACGCCGCCTCTGTCATCTACGGGCGCTTGCCCTATAGGCCGGCACGGTGCTA
GCTAGCTAGGTGCGTGGAGGAGGGTGGGGATGACGAAAGGGTGGGAGGTGCTAAGGCGAGGCATTCCGGGCAGTCGTGGA
CCTAGCGCCATCATCTCCCCTCTCAGGGCTGCAACAATGACAAATTCTGCAGTGTGTAAAGGTGTGAAAAATGAGCTTCA
AGCTGCCAGAATGGAAAATGCCTGAACATTGTTCTGAAGATGAGTACATCTTTTGCAAGTCTTGATCTGTGCACCTCTTC
AGCTGGTTGCCAGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49292.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis