Browse Element(s) Details


Os.49312.1.A1_at

Description gb:AK062868.1
DB_XREF= gi:32972886
TID=Os.49312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-B12, full insert sequence.
FL= gb:AK062868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g048601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein
LOC_Os09g04820OsAffx.25156.5.S1_x_at11/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.1.S1_x_at5/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.4.S1_x_at1/119+2568301..2570428hypothetical protein
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified
LOC_Os09g04860OsAffx.29722.1.S1_at11/119+2585421..2586290hypothetical protein
LOC_Os09g04860Os.49312.1.A1_at1/119+2585421..2586290hypothetical protein
LOC_Os09g04870OsAffx.29723.1.S1_at10/119+2586837..2588885hypothetical protein
LOC_Os09g04880Os.49706.1.S1_at11/119+2596219..2599726prenylated rab acceptor, putative, expressed
LOC_Os09g04890Os.7059.2.S1_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.2.S1_x_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.1.S1_at11/119+2600653..2614920trithorax 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49312.1.A1_at--209--4831Chr07:16731581..16731602 (22 bp)
GCTCAGCTGCTGGAACCTAGAATGG
NONE
Os.49312.1.A1_at--513--5292Chr09:2586163..2586187 (25 bp)
GAATGGTCTACTTCATTGTCAGGGA
LOC_Os09g04860
Os.49312.1.A1_at--56--4371Chr07:16731487..16731511 (25 bp)
CCACCCCGTTCAAGAGACTGAATGT
NONE
Os.49312.1.A1_at--120--8271Chr07:16731431..16731455 (25 bp)
GGCAGTAATGGCACCAAGGATCAAA
NONE
Os.49312.1.A1_at--678--10351Chr07:16731391..16731415 (25 bp)
TTTTTTGCTGAGTCCAAGTTATGGT
NONE
Os.49312.1.A1_at--782--7871Chr07:16731369..16731393 (25 bp)
GGTTTAGCACTGGAGACACATTATT
NONE
Os.49312.1.A1_at--705--5191Chr07:16731332..16731356 (25 bp)
GCAATATGTATTCAGCGTGTGGGTT
NONE
Os.49312.1.A1_at--260--2451Chr07:16731265..16731289 (25 bp)
AAAATCTTACTAGGCGCAAGTGCTA
NONE
Os.49312.1.A1_at--896--5651Chr07:16731234..16731258 (25 bp)
GACAGGTATTTCCAAAGAGATGCAA
NONE
Os.49312.1.A1_at--12--8892Chr09:2586532..2586556 (25 bp)
TGAGGCAAAGTCATGTTTCTAGGGA
NONE
Os.49312.1.A1_at--163--6831Chr07:16731178..16731202 (25 bp)
GTTTCTAGGGACATGCAAAATTGCA
NONE
Target Sequence 
GCTCAGCTGCTGGAACCTAGAATGGTCTACTTCATTGTCAGGGAGTAGAAGGTGGTGGAGTTGTCTCGGAGGCACTCCCT
CAAGGCTGCTGAGGCCACCCCGTTCAAGAGACTGAATGTGAATATACTCTTGAGAAATTTGCAGTAAATTGGCAGTAATG
GCACCAAGGATCAAAGAAAATACTACCATTTTTTTTGCTGAGTCCAAGTTATGGTTTAGCACTGGAGACACATTATTAAT
TTTCTTCTTGCAATATGTATTCAGCGTGTGGGTTGATAATTTAGAGAGCTCTAAAACGATAGCGGAAAATCAAACAAAAA
TCTTACTAGGCGCAAGTGCTAAATAATGACAGGTATTTCCAAAGAGATGCAAGATTGGTCTAAATGGGTTGAGGCAAAGT
CATGTTTCTAGGGACATGCAAAATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49312.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis