Browse Element(s) Details


Os.49314.1.S1_at

Description gb:AK069878.1
DB_XREF= gi:32979902
TID=Os.49314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035G04, full insert sequence.
FL= gb:AK069878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0460011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49314.1.S1_at--804--7691Chr10:2177280..2177304 (25 bp)
GGGTACTTACTCCTACATGGGATTG
LOC_Os10g04600
Os.49314.1.S1_at--131--10091Chr10:2177305..2177329 (25 bp)
TAGGTAACAACTCCTGGTCTACTCC
LOC_Os10g04600
Os.49314.1.S1_at--964--7151Chr10:2177321..2177345 (25 bp)
GTCTACTCCTGGTATTCAGCTACAG
LOC_Os10g04600
Os.49314.1.S1_at--634--1571Chr10:2177338..2177362 (25 bp)
AGCTACAGCATTTCACACTGGACCT
LOC_Os10g04600
Os.49314.1.S1_at--1158--3551Chr10:2177412..2177436 (25 bp)
CATCATCATCCTCAATTCGACTTGT
LOC_Os10g04600
Os.49314.1.S1_at--1002--6631Chr10:2178231..2178255 (25 bp)
GTTGTCAAGCTGTATCTGATGCCTT
LOC_Os10g04600
Os.49314.1.S1_at--775--1591Chr10:2178284..2178308 (25 bp)
AGCTGCTATACTGCCGTTGTTGGTA
LOC_Os10g04600
Os.49314.1.S1_at--1069--1551Chr10:2178332..2178356 (25 bp)
AGCTAGTTCGATCAGCTGTTCCATT
LOC_Os10g04600
Os.49314.1.S1_at--1035--2051Chr10:2178376..2178400 (25 bp)
ACTTCTGAAGCCATGCTACTCTTTT
LOC_Os10g04600
Os.49314.1.S1_at--252--2351Chr10:2178448..2178472 (25 bp)
AAAGCAAGGCATTCAAGCTCCCCAG
LOC_Os10g04600
Os.49314.1.S1_at--431--3371Chr10:2178470..2178494 (25 bp)
CAGCCACTGATGTAGGATGCACTTC
LOC_Os10g04600
Target Sequence 
GGGTACTTACTCCTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTCACACTGGA
CCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGGCATCATCATCCTCAATTCGACTTGTACA
GAAGCTTCCCGCCACCATTATCGCTTTCAAGCATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAG
CTGTATCTGATGCCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTGGTATCATATTTATG
TACTACCGTACTAGCTAGTTCGATCAGCTGTTCCATTTGAATTCCACAGTGGTTTAACTTCTGAAGCCATGCTACTCTTT
TTTTGCCCTTCTGCTGCATTCTGGAACTAAACAGAGTAGTCGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGA
TGTAGGATGCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis