Browse Element(s) Details


Os.49315.1.S1_at

Description gb:AK111875.1
DB_XREF= gi:37988538
TID=Os.49315.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043A02, full insert sequence.
FL= gb:AK111875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1994011/11CwfJ-like family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed
LOC_Os09g19910Os.7560.1.S1_at11/119+11912657..11915279expressed protein
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein
LOC_Os09g19970OsAffx.6337.1.S1_x_at11/119+11954986..11955875expressed protein
LOC_Os09g19980OsAffx.17788.1.S1_at11/119+11957383..11959727hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49315.1.S1_at--1105--1252Chr09:11937926..11937950 (25 bp)
AGATATTCCATTTAGCAGCACAGAG
LOC_Os09g19940
Os.49315.1.S1_at--817--1311Chr09:11938467..11938491 (25 bp)
AGATGGTGATGCTAACCGCGCCAGG
LOC_Os09g19940
Os.49315.1.S1_at--843--1791Chr09:11938481..11938505 (25 bp)
ACCGCGCCAGGGAATTGTTAAGATC
LOC_Os09g19940
Os.49315.1.S1_at--722--5911Chr09:11938540..11938564 (25 bp)
GAGCTACCAGAAGGTTCAGTGCTTT
LOC_Os09g19940
Os.49315.1.S1_at--1052--691Chr09:11938583..11938607 (25 bp)
ATGAGAAGTTCCCTGCTCAGTTTGG
LOC_Os09g19940
Os.49315.1.S1_at--435--7391Chr09:11938831..11938855 (25 bp)
GTGAGTTTGATCCAGCTGAATGACA
LOC_Os09g19940
Os.49315.1.S1_at--519--9771Chr09:11938863..11938887 (25 bp)
TAAGTTGCTAATTTGTCACCGGACA
LOC_Os09g19940
Os.49315.1.S1_at--1046--7091Chr09:11938877..11938901 (25 bp)
GTCACCGGACAAGAACGTGCTGCTA
LOC_Os09g19940
Os.49315.1.S1_at--728--1791Chr09:11938960..11938984 (25 bp)
ACCGACTTTGAGGTCCATTATTGTA
LOC_Os09g19940
Os.49315.1.S1_at--1--10071Chr09:11939044..11939068 (25 bp)
TAGTGCCACGTTTGTTCTTCGAGAC
LOC_Os09g19940
Os.49315.1.S1_at--501--5991Chr09:11939064..11939088 (25 bp)
GAGACTTCTCGTATACAATGTGATG
LOC_Os09g19940
Target Sequence 
AGATATTCCATTTAGCAGCACAGAGACTGGGATTTGAATTTTCTGTAGTGAATCCAGATGGTGATGCTAACCGCGCCAGG
GAATTGTTAAGATCAGAGTGTGACAGCAAATCAAGCTTGTTTTATGTTGAGCTACCAGAAGGTTCAGTGCTTTTACATTT
GGTTGACAGTAATGAGAAGTTCCCTGCTCAGTTTGGCCGTGAGGTGTTGGCTGGGTTGNTAAGCATGGCAGATCGTGCAG
ATTGGAGGAACTGTAAGGTTTCTAAAGAAGAAGAAATCCAGATGGTGGATGATTTTAAACAAGGGTTTCGTGAGTTTGAT
CCAGCTGAATGACAATGTGCTTAAGTTGCTAATTTGTCACCGGACAAGAACGTGCTGCTAAACTTGCATTGTATTTTTGT
AGTTGAAAGTACTTAGGTAGGCCATATTTGAGAAATGGACCGACTTTGAGGTCCATTATTGTAATTTCTATTGATTGATT
CGGGAACAATTTTTTTTTNCAGTTAAGAGTTAAAATTTGGCCGTAGTGCCACGTTTGTTCTTCGAGACTTCTCGTATACA
ATGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis