Browse Element(s) Details


OsAffx.6337.1.S1_x_at

Description tigr:9637.m01694
TID=OsAffx.6337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1997011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein
LOC_Os09g19970OsAffx.6337.1.S1_x_at11/119+11954986..11955875expressed protein
LOC_Os09g19980OsAffx.17788.1.S1_at11/119+11957383..11959727hypothetical protein
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6337.1.S1_x_at--511--991Chr09:11955484..11955508 (25 bp)
AGGAGGACGCGAACTACATGAGCAT
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--188--6191Chr09:11955486..11955510 (25 bp)
GAGGACGCGAACTACATGAGCATGG
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--380--8111Chr09:11955488..11955512 (25 bp)
GGACGCGAACTACATGAGCATGGAT
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--691--5931Chr09:11955503..11955527 (25 bp)
GAGCATGGATGAGGCGTACGCGCTG
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--555--10651Chr09:11955618..11955642 (25 bp)
TTCCAGGACGACGAGCAGAGGCGGC
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--966--8251Chr09:11955640..11955664 (25 bp)
GGCAGCGTCTCGACTCCATCTTCAA
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--111--3271Chr09:11955662..11955686 (25 bp)
CAACTACACGCAGATGCTCAAGCGG
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--908--5711Chr09:11955651..11955675 (25 bp)
GACTCCATCTTCAACTACACGCAGA
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--972--431Chr09:11955657..11955681 (25 bp)
ATCTTCAACTACACGCAGATGCTCA
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--687--2531Chr09:11955798..11955822 (25 bp)
AACTACACGCAGATGCTCAAGCAGC
LOC_Os09g19970
OsAffx.6337.1.S1_x_at--135--4131Chr09:11955805..11955829 (25 bp)
CGCAGATGCTCAAGCAGCGCGCGGC
LOC_Os09g19970
Target Sequence 
AGGAGGACGCGAACTACATGAGCATGGATGAGGCGTACGCGCTGGTGATGGCGGCGCGGCAGCGGCCGCCGCCGACGGAG
GAGGAGGTGAGGAGGTCGGAGGTGGACGCCAAGGCGGAGGAGCTCGTCGCCGAGTTCCAGGACGACGAGCAGAGGCGGCA
GCGTCTCGACTCCATCTTCAACTACACGCAGATGCTCAAGCGGCCATCGCCGACGGAGGAGGGGGCGAGGAGGTCGGAGG
TGGACGCGGAGGCGGAGGAGCTCGTCGCCGAGCTCCCGGACGAGCAGAGGCGGCGCCGCCTCGACTCCATCTTCAACTAC
ACGCAGATGCTCAAGCAGCGCGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6337.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis