Browse Element(s) Details


Os.18640.1.S1_at

Description gb:AK068537.1
DB_XREF= gi:32978554
TID=Os.18640.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152L24, full insert sequence.
FL= gb:AK068537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2000011/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein
LOC_Os09g19970OsAffx.6337.1.S1_x_at11/119+11954986..11955875expressed protein
LOC_Os09g19980OsAffx.17788.1.S1_at11/119+11957383..11959727hypothetical protein
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20010Os.22694.2.S1_x_at11/119+11984970..11988547SNF1-related protein kinase regulatory beta subunit 2, putative, expressed
LOC_Os09g20020OsAffx.29932.1.S1_at11/119+11988757..11992427VQ motif family protein, expressed
LOC_Os09g20030Os.49560.1.S1_at11/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20030Os.49560.1.S2_at10/119+11997383..12000228NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18640.1.S1_at--722--7671Chr09:11975511..11975535 (25 bp)
GGGTTCGGTGAGTTTGAGAACTTCA
LOC_Os09g20000
Os.18640.1.S1_at--1159--8871Chr09:11975525..11975549 (25 bp)
TGAGAACTTCAGAAACTGTAACAAC
LOC_Os09g20000
Os.18640.1.S1_at--220--1951Chr09:11975539..11975563 (25 bp)
ACTGTAACAACAATGGGAGGCACCA
LOC_Os09g20000
Os.18640.1.S1_at--249--7651Chr09:11975553..11975577 (25 bp)
GGGAGGCACCATGGATTACCTGTCT
LOC_Os09g20000
Os.18640.1.S1_at--221--5091Chr09:11975558..11975582 (25 bp)
GCACCATGGATTACCTGTCTGATCT
LOC_Os09g20000
Os.18640.1.S1_at--143--151Chr09:11975567..11975591 (25 bp)
ATTACCTGTCTGATCTTCTCGGCGG
LOC_Os09g20000
Os.18640.1.S1_at--351--9111Chr09:11976616..11976640 (25 bp)
TGCTCCATCATGTGAATTACTGTAA
LOC_Os09g20000
Os.18640.1.S1_at--407--5231Chr09:11976643..11976667 (25 bp)
GAATATTAGTGTAATCTCTTCAGAG
LOC_Os09g20000
Os.18640.1.S1_at--104--10531Chr09:11976661..11976685 (25 bp)
TTCAGAGTTCAGATGAATGTACGAA
LOC_Os09g20000
Os.18640.1.S1_at--615--6991Chr09:11976679..11976703 (25 bp)
GTACGAAATGTATGTGCAGATATGA
LOC_Os09g20000
Os.18640.1.S1_at--190--10133Chr09:11976699..11976723 (25 bp)
TATGAGAGATTGTACTCCCTCCATC
LOC_Os09g20000
Target Sequence 
GGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCG
GCGGCGGGANNNGNNNNNNNNNNNNGNNNNNNAANAGGAAGCNAGTACAAGGTGACGGTGCAGGGGNTTCGTGGAGCCNG
CACAAGGTGGTGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTNGGCCCTACGTGCCCTACACCCTCGTCGCCC
ACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCC
AGCTNNGGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTG
CTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAG
ATATGAGAGATTGTACTCCCTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis