Browse Element(s) Details


Os.49560.1.S1_at

Description gb:AK111465.1
DB_XREF= gi:32996674
TID=Os.49560.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D05, full insert sequence.
FL= gb:AK111465.1 gb:AK063494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2003011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20010Os.22694.2.S1_x_at11/119+11984970..11988547SNF1-related protein kinase regulatory beta subunit 2, putative, expressed
LOC_Os09g20020OsAffx.29932.1.S1_at11/119+11988757..11992427VQ motif family protein, expressed
LOC_Os09g20030Os.49560.1.S1_at11/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20030Os.49560.1.S2_at10/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20040OsAffx.29933.1.S1_at11/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20040Os.27612.1.S1_at1/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20050OsAffx.17790.1.S1_at11/119+12013838..12017214hypothetical protein
LOC_Os09g20060Os.26886.2.S1_s_at8/119+12020477..12022219hypothetical protein
LOC_Os09g20060Os.26886.6.S1_s_at7/119+12020477..12022219hypothetical protein
LOC_Os09g20060OsAffx.16467.1.S1_at4/119+12020477..12022219hypothetical protein
LOC_Os09g20060OsAffx.3425.1.S1_at1/119+12020477..12022219hypothetical protein
LOC_Os09g20070NANA9+12022469..12023593transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49560.1.S1_at--471--6071Chr09:11998635..11998659 (25 bp)
GAGTTCATAGAGTTCGCTCTTGCGA
LOC_Os09g20030
Os.49560.1.S1_at--1055--9791Chr09:11998685..11998709 (25 bp)
TAACCTCCAGCAGAGTCTCACTGAA
LOC_Os09g20030
Os.49560.1.S1_at--1067--8911Chr09:11998799..11998823 (25 bp)
TGAGCCATTGAAGTCTGCCCAACAA
LOC_Os09g20030
Os.49560.1.S1_at--135--8971Chr09:11998877..11998901 (25 bp)
TGAAAACAGGCACTTCCGACTGGAA
LOC_Os09g20030
Os.49560.1.S1_at--177--4531Chr09:11998907..11998931 (25 bp)
GCCGCCTACCATTTTCGATGAATTT
LOC_Os09g20030
Os.49560.1.S1_at--269--911Chr09:11998936..11998960 (25 bp)
AGGCGTGTGCATTTGGCTCAGATCG
LOC_Os09g20030
Os.49560.1.S1_at--766--3431Chr09:11998954..11998978 (25 bp)
CAGATCGCTGCGGTGTTAATCCAGA
LOC_Os09g20030
Os.49560.1.S1_at--905--1331Chr09:11999017..11999041 (25 bp)
AGAGGTGTCCTTTAGCTGCTGAAAC
LOC_Os09g20030
Os.49560.1.S1_at--207--8111Chr09:11999046..11999070 (25 bp)
GGACGTTTACTGAAGCCTATGCTGG
LOC_Os09g20030
Os.49560.1.S1_at--513--4931Chr09:11999152..11999176 (25 bp)
GCTTGAGCTATCTGTATCTACCTTC
LOC_Os09g20030
Os.49560.1.S1_at--958--10251Chr09:11999195..11999219 (25 bp)
TTTGTTTTGCTCCATGTATCCTAAA
LOC_Os09g20030
Target Sequence 
GAGTTCATAGAGTTCGCTCTTGCGAATTGGATGCAGTCTGATAATCTGTGTAACCTCCAGCAGAGTCTCACTGAAAGCAT
TGTCAAGTTTAGGTTCTTGCTTGTTCTTGATGATGTGTGGGACGATGTATATGCTAATCAAGACAACAGATGGCAGAATT
TCCTTGAGCCATTGAAGTCTGCCCAACAAGGGAGTGCGATTCTGTTGACGACAAGGTCTCAAAGGGTTGCGGATCTAGTG
AATGAAAACAGGCACTTCCGACTGGAAGGTCTGCCGCCTACCATTTTCGATGAATTTTTTGAGGCGTGTGCATTTGGCTC
AGATCGCTGCGGTGTTAATCCAGAACTGAACCCCATTGGGAAAAGGATAATTCCACAGCTGAAGAGGTGTCCTTTAGCTG
CTGAAACTCTTGGACGTTTACTGAAGCCTATGCTGGATAGAGAGCACTGGAATCAGATTGCAGGAAGTGAGTTGTGGGAG
CTGAAACAGGAGAAATATGACATTTTGCCAGTCCTTCGCTTGAGCTATCTGTATCTACCTTCCTATCTGAGAAACTGTTT
TTTGTTTTGCTCCATGTATCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis