Browse Element(s) Details


OsAffx.29933.1.S1_at

Description tigr:9637.m01702
TID=OsAffx.29933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2004011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20010Os.22694.2.S1_x_at11/119+11984970..11988547SNF1-related protein kinase regulatory beta subunit 2, putative, expressed
LOC_Os09g20020OsAffx.29932.1.S1_at11/119+11988757..11992427VQ motif family protein, expressed
LOC_Os09g20030Os.49560.1.S1_at11/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20030Os.49560.1.S2_at10/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20040OsAffx.29933.1.S1_at11/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20040Os.27612.1.S1_at1/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20050OsAffx.17790.1.S1_at11/119+12013838..12017214hypothetical protein
LOC_Os09g20060Os.26886.2.S1_s_at8/119+12020477..12022219hypothetical protein
LOC_Os09g20060Os.26886.6.S1_s_at7/119+12020477..12022219hypothetical protein
LOC_Os09g20060OsAffx.16467.1.S1_at4/119+12020477..12022219hypothetical protein
LOC_Os09g20060OsAffx.3425.1.S1_at1/119+12020477..12022219hypothetical protein
LOC_Os09g20070NANA9+12022469..12023593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g20080Os.26886.3.S1_x_at6/119+12025537..12027725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g20090NANA9+12029279..12034190L-ascorbate oxidase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29933.1.S1_at--1020--5371Chr09:12008995..12009019 (25 bp)
GAAGCAGCTCAGTTAGTTTCCAATC
LOC_Os09g20040
OsAffx.29933.1.S1_at--323--6851Chr09:12009010..12009034 (25 bp)
GTTTCCAATCACTTACCAAGCTATC
LOC_Os09g20040
OsAffx.29933.1.S1_at--279--2711Chr09:12009027..12009051 (25 bp)
AAGCTATCCATTACCTGGTGCAGAA
LOC_Os09g20040
OsAffx.29933.1.S1_at--358--9791Chr09:12009055..12009079 (25 bp)
TAACGAGCCTTGATAATTTCCTACA
LOC_Os09g20040
OsAffx.29933.1.S1_at--647--9131Chr09:12009123..12009147 (25 bp)
TGCGAGGAATTAGCGTCACTGCCAA
LOC_Os09g20040
OsAffx.29933.1.S1_at--927--191Chr09:12009331..12009355 (25 bp)
ATTTGCGGTTTTGTCCGAGCATCGA
LOC_Os09g20040
OsAffx.29933.1.S1_at--783--5911Chr09:12009347..12009371 (25 bp)
GAGCATCGAGTCCATTTCTGCACAA
LOC_Os09g20040
OsAffx.29933.1.S1_at--896--3291Chr09:12009369..12009393 (25 bp)
CAAATCTGGAGTGGCCTCTGGTCAA
LOC_Os09g20040
OsAffx.29933.1.S1_at--720--5351Chr09:12009404..12009428 (25 bp)
GAAGATCGTCTGTTGCCAGGGACTG
LOC_Os09g20040
OsAffx.29933.1.S1_at--1073--2971Chr09:12009468..12009492 (25 bp)
AATGTGGACATCAGGCACTGCTCGA
LOC_Os09g20040
OsAffx.29933.1.S1_at--31--1991Chr09:12009484..12009508 (25 bp)
ACTGCTCGAAGCTGCAAGACCTGGA
LOC_Os09g20040
Target Sequence 
GAAGCAGCTCAGTTAGTTTCCAATCACTTACCAAGCTATCCATTACCTGGTGCAGAAGTCTAACGAGCCTTGATAATTTC
CTACAACCAGAATGTCTGCCAATGATCAAGGTAATACAGATCTCAAATTGCGAGGAATTAGCGTCACTGCCAACCAACAA
CCTTGTGCATTTTGTTCATCTGGAAGATCTGGAGATCTGCCATTGTTGGAATCTCAATTGGGAGCCAGGCTTGGCCTTGC
CACCCTCTTTGAAATCGCTCAAGCTGGAAGCATGTGGGGAGTTCTCCGATTCGACGCTCAGCTGCCTGCACAACCTCACC
GCTCTTACCATTCTGAATTTGCGGTTTTGTCCGAGCATCGAGTCCATTTCTGCACAAATCTGGAGTGGCCTCTGGTCAAT
AGAGAACTTGAAGATCGTCTGTTGCCAGGGACTGGTTACAGTTGGAGGATCAGAGTCGATTGCAGGGATAAAGAATGTGG
ACATCAGGCACTGCTCGAAGCTGCAAGACCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis