Browse Element(s) Details


Os.22694.2.S1_x_at

Description gb:AK120754.1
DB_XREF= gi:37990377
TID=Os.22694.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013133A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006L01, full insert sequence.
FL= gb:AK120754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2001011/11SNF1-related protein kinase regulatory beta subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20010Os.22694.2.S1_x_at11/119+11984970..11988547SNF1-related protein kinase regulatory beta subunit 2, putative, expressed
LOC_Os09g20020OsAffx.29932.1.S1_at11/119+11988757..11992427VQ motif family protein, expressed
LOC_Os09g20030Os.49560.1.S1_at11/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20030Os.49560.1.S2_at10/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20040OsAffx.29933.1.S1_at11/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20040Os.27612.1.S1_at1/119+12003418..12009545NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004679molecular_functionAMP-activated protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22694.2.S1_x_at--571--3271Chr09:11987873..11987897 (25 bp)
CAACAGAGTGCTTTGCTAATTGCTA
LOC_Os09g20010
Os.22694.2.S1_x_at--91--5331Chr09:11988032..11988056 (25 bp)
GAAGTGCCAACATCACCAGATTCAA
LOC_Os09g20010
Os.22694.2.S1_x_at--590--6551Chr09:11988050..11988074 (25 bp)
GATTCAAGCTACAACAACCCTGTTC
LOC_Os09g20010
Os.22694.2.S1_x_at--773--331Chr09:11988129..11988153 (25 bp)
ATACATTATTGAGCTTCCCACCAAG
LOC_Os09g20010
Os.22694.2.S1_x_at--1043--3211Chr09:11988155..11988179 (25 bp)
CAAGATGATTCAAGCAGCCTTCCTC
LOC_Os09g20010
Os.22694.2.S1_x_at--676--2331Chr09:11988218..11988242 (25 bp)
AAAGAGAACTCTAGATCCGTCGTCG
LOC_Os09g20010
Os.22694.2.S1_x_at--249--5731Chr09:11988280..11988304 (25 bp)
GACTGTTGTGCTGTACAAGCCCGTA
LOC_Os09g20010
Os.22694.2.S1_x_at--920--191Chr09:11988352..11988376 (25 bp)
ATTTCCTCGTGCAGGGACTAGACAC
LOC_Os09g20010
Os.22694.2.S1_x_at--90--5631Chr09:11988372..11988396 (25 bp)
GACACCCACGAGGTTGAACTGCCAA
LOC_Os09g20010
Os.22694.2.S1_x_at--575--6191Chr09:11988436..11988460 (25 bp)
GAGGAACAATCTAGCTGCCCATGAA
LOC_Os09g20010
Os.22694.2.S1_x_at--984--6511Chr09:11988469..11988493 (25 bp)
GATTCAACCCTTGTACTTAATTGGC
LOC_Os09g20010
Target Sequence 
CAACAGAGTGCTTTGCTAATTGCTATGGACCGGCAAGTCAGGGGTGACCATGAAGGGATCAACGTTGTTGGGTTTGAAGT
GCCAACATCACCAGATTCAAGCTACAACAACCCTGTTCCTGGAAATGAAGATGAAGCTCGAGAGCCCCCATTGGTTCCTC
CTCATCTGCAGCATACATTATTGAGCTTCCCACCAAGCCAAGATGATTCAAGCAGCCTTCCTCCACCTCAAAACGTGGTA
CTCAACNACCTCTACATAGAGAAAGAGAACTCTAGATCCGTCGTCGCCCTGGGGATTACCCANTCGGTTCAGGGCAAAGT
TTGTGACTGTTGTGCTGTACAAGCCCGTACAAAGGCGGTAGGGTGAAACATNTTGTGTACCTGCATTCCTGCTTNCATTT
CCTCGTGCAGGGACTAGACACCCACGAGGTTGAACTGCCAAACAAATAGAAACCCTCCTTGTTGTAGTCCTGAGGAAACA
GAGGAACAATCTAGCTGCCCATGAATCTCAAATGATTCAACCCTTGTACTTAATTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22694.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis