Browse Element(s) Details


OsAffx.29932.1.S1_at

Description tigr:9637.m01700
TID=OsAffx.29932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2002011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20010Os.22694.2.S1_x_at11/119+11984970..11988547SNF1-related protein kinase regulatory beta subunit 2, putative, expressed
LOC_Os09g20020OsAffx.29932.1.S1_at11/119+11988757..11992427VQ motif family protein, expressed
LOC_Os09g20030Os.49560.1.S1_at11/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20030Os.49560.1.S2_at10/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20040OsAffx.29933.1.S1_at11/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20040Os.27612.1.S1_at1/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20050OsAffx.17790.1.S1_at11/119+12013838..12017214hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29932.1.S1_at--971--291Chr09:11989571..11989595 (25 bp)
ATAGCGAGCCTGTTCATCACCGTGA
LOC_Os09g20020
OsAffx.29932.1.S1_at--571--931Chr09:11989530..11989554 (25 bp)
AGGCAGCTCACCTGTAGTGTTCAGA
LOC_Os09g20020
OsAffx.29932.1.S1_at--578--2691Chr09:11989496..11989520 (25 bp)
AAGCTGAGCGTCACCTGGTGCAGAA
LOC_Os09g20020
OsAffx.29932.1.S1_at--39--9771Chr09:11989468..11989492 (25 bp)
TAATGAGCCTCGACAATCTCCTGCA
LOC_Os09g20020
OsAffx.29932.1.S1_at--937--9031Chr09:11989447..11989471 (25 bp)
TGCAGCCAGAGCTTCTACCTGAAAT
LOC_Os09g20020
OsAffx.29932.1.S1_at--193--1051Chr09:11989420..11989444 (25 bp)
AGGTGATACGGATCTCCAACTGCGA
LOC_Os09g20020
OsAffx.29932.1.S1_at--414--431Chr09:11989386..11989410 (25 bp)
ATCATTGCCGACGAATCAGCTCATC
LOC_Os09g20020
OsAffx.29932.1.S1_at--67--1591Chr09:11989369..11989393 (25 bp)
AGCTCATCAAATTCACTCACCTGGA
LOC_Os09g20020
OsAffx.29932.1.S1_at--273--6411Chr09:11989343..11989367 (25 bp)
GATCTGGAGGTGTCCCACTGCTGGA
LOC_Os09g20020
OsAffx.29932.1.S1_at--577--9131Chr09:11989256..11989280 (25 bp)
TGCGGAGAGCTCACGGATTCAGTTC
LOC_Os09g20020
OsAffx.29932.1.S1_at--146--2291Chr09:11989138..11989162 (25 bp)
AAATGCCGTCTCTCCAGAGGCTGAA
LOC_Os09g20020
Target Sequence 
ATAGCGAGCCTGTTCATCACCGTGACGGGGAGCAGCAGCAGAGGCAGCTCACCTGTAGTGTTCAGATCACTCACCAAGCT
GAGCGTCACCTGGTGCAGAAAGCTAATGAGCCTCGACAATCTCCTGCAGCCAGAGCTTCTACCTGAAATCAAGGTGATAC
GGATCTCCAACTGCGAGGAGTTAGCATCATTGCCGACGAATCAGCTCATCAAATTCACTCACCTGGAGGATCTGGAGGTG
TCCCACTGCTGGAGCCTGAGCTGGGAGCAAGGCCTGACCCTGCCCAGATCCCTGAAATCGCTCAAGCTGGAAGCTTGCGG
AGAGCTCACGGATTCAGTTCTCCGATGCGGCCTGCGTGAACTCCCTGTGCTCGTGAGCTTGGAGTTGCAGTTTTGCTCCG
GGGTGGAGTGCATCGGCGGTGAGATATGGAGCGAAATGCCGTCTCTCCAGAGGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis