Browse Element(s) Details


Os.49319.1.S1_at

Description gb:AK107987.1
DB_XREF= gi:32993196
TID=Os.49319.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F02, full insert sequence.
FL= gb:AK107987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5299011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52960OsAffx.3051.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S1_at11/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52960Os.16651.1.S2_at10/112+32379001..32390223PHD-finger family protein, expressed
LOC_Os02g52970OsAffx.22699.1.S1_x_at2/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52970OsAffx.8279.1.S1_at1/112+32399665..32404759retrotransposon protein, putative, unclassified
LOC_Os02g52980NANA2+32405671..32408867hypothetical protein
LOC_Os02g52990Os.49319.1.S1_at11/112+32412624..32413492Auxin responsive protein, expressed
LOC_Os02g53000Os.54791.1.S1_at11/112+32420454..32423529LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os02g53010NANA2+32435603..32436459retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49319.1.S1_at--203--3291Chr02:32413145..32413169 (25 bp)
CAAAGTCAGCTCCTGATCGATCGAG
LOC_Os02g52990
Os.49319.1.S1_at--1033--9151Chr02:32413180..32413204 (25 bp)
TGCGCCATGGCGGAGTCGATCTGCC
LOC_Os02g52990
Os.49319.1.S1_at--417--5811Chr02:32413211..32413235 (25 bp)
GACGCCCCGCGTACGTGTACAGTAG
LOC_Os02g52990
Os.49319.1.S1_at--1077--4831Chr02:32413248..32413272 (25 bp)
GCTAGCAGAGACAGTACACGACGAG
LOC_Os02g52990
Os.49319.1.S1_at--388--7411Chr02:32413302..32413326 (25 bp)
GTGATTAGTGATTTGCTCCGGGTTT
LOC_Os02g52990
Os.49319.1.S1_at--282--9291Chr02:32413318..32413342 (25 bp)
TCCGGGTTTTCGATCTCATGATTTT
LOC_Os02g52990
Os.49319.1.S1_at--285--6551Chr02:32413337..32413361 (25 bp)
GATTTTGGTCTCTTGATTTCCCCTT
LOC_Os02g52990
Os.49319.1.S1_at--580--6391Chr02:32413380..32413404 (25 bp)
GATCGATCTTGTATAGACGCATGTA
LOC_Os02g52990
Os.49319.1.S1_at--521--6591Chr02:32413412..32413435 (24 bp)
GATTGACAGGTCGACTTATGTATGT
LOC_Os02g52990
Os.49319.1.S1_at--762--5471Chr02:32413449..32413473 (25 bp)
GAACTCACAGTTCATAGCTATTATA
LOC_Os02g52990
Os.49319.1.S1_at--54--1571Chr02:32413464..32413488 (25 bp)
AGCTATTATATTCTCTTCACACATT
LOC_Os02g52990
Target Sequence 
CAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTAC
GTGTACAGTAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATACAGTAGCTAGGTG
ATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGATTTCCCCTTCTTCTTCTTGATCTTTTTGATCG
ATCTTGTATAGACGCATGTATGATAGGATTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATA
GCTATTATATTCTCTTCACACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis