Browse Element(s) Details


Os.49334.2.S1_at

Description gb:AK071477.1
DB_XREF= gi:32981500
TID=Os.49334.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093B15, full insert sequence.
FL= gb:AK071477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g092901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09320NANA10+4806686..4807186transposon protein, putative, unclassified
LOC_Os10g09330NANA10+4809446..4810262hypothetical protein
LOC_Os10g09340OsAffx.6614.1.S1_at11/1110+4810687..4811333hypothetical protein
LOC_Os10g09350Os.46012.2.S1_x_at10/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.46012.3.S1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.27088.1.A1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49334.2.S1_at--4--8351NONE
GGCTGATGACATCGGCCGAGGAGCT
NONE
Os.49334.2.S1_at--436--2651NONE
AAGCCAGGGCGGTTTTGCTGCGCCG
NONE
Os.49334.2.S1_at--57--6671NONE
GTTGCTTCGCCCAGGTCATCGGTTG
NONE
Os.49334.2.S1_at--402--10631NONE
TTCGCCCAGGTCATCGGTTGGTGGT
NONE
Os.49334.2.S1_at--1058--2571NONE
AACGGGATGACGTCGTGCAGGACAT
NONE
Os.49334.2.S1_at--310--2111NONE
ACATGATCGTGATGGGCAACGGACC
NONE
Os.49334.2.S1_at--417--5831NONE
GACCGGGCCGCCTTGATTATTGGAT
NONE
Os.49334.2.S1_at--375--3971Chr10:4792822..4792841 (20 bp)
CGGGCCGCCTTGATTATTGGATCGG
LOC_Os10g09290
Os.49334.2.S1_at--404--7651NONE
GGGAGGCTGTGGAATCCTTCACGAC
NONE
Os.49334.2.S1_at--36--7531NONE
GTGGAATCCTTCACGACAGAGGACA
NONE
Os.49334.2.S1_at--515--4311NONE
CCTTCACGACAGAGGACAAGATGGA
NONE
Target Sequence 
GGCTGATGACATCGGCCGAGGAGCTGGCGTGGTTGGCGGTGAGGCTGGCGGCTGGCTGGGCGCCGCCGACGTGCTTGGGC
GGCGTTGGGCGAAGAGCCGGGGCGGCCGTGTTGCGGCGGCGTACTTGGTGGTGGCGGCGTCGGTCGAAGCCAGGGCGGTT
TTGCTGCGCCGGCGTGCTTGGTGGTGGCTGCGTTCGTCCCCGAACACCCGCTGCTCGACGCCCTCAGTTGCTTCGCCCAG
GTCATCGGTTGGTGGTGACGGGCGGCCACGGGACCAACGGGATGACGTCGTGCAGGACATGATCGTGATGGGCAACGGAC
CGGGCCGCCTTGATTATTGGATCGGGGAGGCTGTGGAATCCTTCACGACAGAGGACAAGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49334.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis