Browse Element(s) Details


Os.49353.2.S1_at

Description gb:AK109740.1
DB_XREF= gi:32994949
TID=Os.49353.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-D11, full insert sequence.
FL= gb:AK109740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1022011/11Methyladenine glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10230Os.49353.1.S1_at11/113+5185380..5190478expressed protein
LOC_Os03g10240Os.18318.1.S1_at10/113+5193230..5196769expressed protein
LOC_Os03g10250Os.21800.2.S1_at10/113+5197724..5198821expressed protein
LOC_Os03g10260OsAffx.25035.1.S1_at10/113+5204554..5205453hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49353.2.S1_at--535--4991Chr03:5182473..5182497 (25 bp)
GCATGATGTGCACAGCTGAGTGATT
LOC_Os03g10220
Os.49353.2.S1_at--93--8831Chr03:5182453..5182477 (25 bp)
TGATTGCTGCAAGCCCGCGAGGTGA
LOC_Os03g10220
Os.49353.2.S1_at--883--2651Chr03:5182443..5182467 (25 bp)
AAGCCCGCGAGGTGACGACTACAAT
LOC_Os03g10220
Os.49353.2.S1_at--1080--8911Chr03:5182431..5182455 (25 bp)
TGACGACTACAATCCACGCTTTGAA
LOC_Os03g10220
Os.49353.2.S1_at--165--9851Chr03:5182424..5182448 (25 bp)
TACAATCCACGCTTTGAATACCTGG
LOC_Os03g10220
Os.49353.2.S1_at--272--9011Chr03:5182410..5182434 (25 bp)
TGAATACCTGGAGGCATGCTCTTCT
LOC_Os03g10220
Os.49353.2.S1_at--1061--6191Chr03:5182402..5182424 (23 bp)
GAGGCATGCTCTTCTCTGGAAGTGA
LOC_Os03g10220
Os.49353.2.S1_at--157--9091Chr03:5182257..5182418 (25 bp)
TGCTCTTCTCTGGAAGTGATTTTTT
LOC_Os03g10220
Os.49353.2.S1_at--978--3551Chr03:5182164..5182188 (25 bp)
CATCAACTTGTTACATGAAGGAGAT
LOC_Os03g10220
Os.49353.2.S1_at--584--6111Chr03:5182128..5182152 (25 bp)
GAGGAGAAAATTAACTTCCAGGAAG
LOC_Os03g10220
Os.49353.2.S1_at--387--9231Chr03:5182112..5182136 (25 bp)
TCCAGGAAGAGATCACATGCCGGTC
LOC_Os03g10220
Target Sequence 
GCATGATGTGCACAGCTGAGTGATTGCTGCAAGCCCGCGAGGTGACGACTACAATCCACGCTTTGAATACCTGGAGGCAT
GCTCTTCTCTGGAAGTGATTTTTTTTTCTCAAAGTTTACCCATGGTGGAGGTGGATAGGGTGAATAGATGAAGGGGTGAA
GAGAACTGAAATCATCAACTTGTTACATGAAGGAGATATAAAGGGGTGGAGGAGAAAATTAACTTCCAGGAAGAGATCAC
ATGCCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49353.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis