Browse Element(s) Details


Os.49363.1.S1_x_at

Description gb:AK103031.1
DB_XREF= gi:32988240
TID=Os.49363.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117C13, full insert sequence.
FL= gb:AK103031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5424010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g54750NANA3+31064096..31065916COBRA-like protein 4 precursor, putative, expressed
LOC_Os03g54760Os.14445.1.S1_at11/113+31069119..31072602Mitochondrial carrier protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49363.1.S1_x_at--39--5411NONE
GAAGCTACGAGCATTGGCCCATTGT
NONE
Os.49363.1.S1_x_at--417--811Chr03:31046740..31046759 (20 bp)
ATGGGTCATCCCAGCAGACTGTGTG
LOC_Os03g54240
Os.49363.1.S1_x_at--272--6611Chr03:31046776..31046800 (25 bp)
GATTGGCTGCTACATCCAGAGACGC
LOC_Os03g54240
Os.49363.1.S1_x_at--218--10271Chr03:31046961..31046985 (25 bp)
TTTGTTGGCTCTGTACTCTCAAGAA
LOC_Os03g54240
Os.49363.1.S1_x_at--353--5351Chr03:31047528..31047552 (25 bp)
GAAGTTGCTCACTACTAATGTCAGA
LOC_Os03g54240
Os.49363.1.S1_x_at--395--9011Chr03:31047560..31047674 (25 bp)
TGAATCATCTATGCAGGTCCTGTAC
LOC_Os03g54240
Os.49363.1.S1_x_at--625--7251Chr03:31047666..31047690 (25 bp)
GTCCTGTACTGCTTCGAACTGCAAG
LOC_Os03g54240
Os.49363.1.S1_x_at--613--7871Chr03:31047718..31047742 (25 bp)
GGTTTTCTTGTCAGTGGAGCTTCAT
LOC_Os03g54240
Os.49363.1.S1_x_at--599--2231Chr03:31047788..31047812 (25 bp)
ACAATTACCTGCCTGATTCACTGAA
LOC_Os03g54240
Os.49363.1.S1_x_at--121--9971Chr03:31047813..31047837 (25 bp)
TACCGTCTTCTTTCTTGGTTGTGTA
LOC_Os03g54240
Os.49363.1.S1_x_at--975--8551Chr03:31047828..31047852 (25 bp)
TGGTTGTGTACCCTGAATTCATTTA
LOC_Os03g54240
Target Sequence 
GAAGCTACGAGCATTGGCCCATTGTCATGGGTCATCCCAGCAGACTGTGTGCCACCAAGTAGTAGATGATTGGCTGCTAC
ATCCAGAGACGCTTGCCAAGGTGCCACAACGAGGAATAGGCCATGAAGAAGACATAATTTTCCCCATTTTGTTTGTTGGC
TCTGTACTCTCAAGAAACTAGCTTCCAGAGTGCATGGAGGCCTGAGGAAGTTGCTCACTACTAATGTCAGAATCCACATG
AATCATCTATGCAGGTCCTGTACTGCTTCGAACTGCAAGGAACTGGCAGTACAACCTGATCTTAATGGTTTTCTTGTCAG
TGGAGCTTCATTGAAGGTAAAGAGGAATACAAACATATTAGAATAATTGTGTAGACACAATTACCTGCCTGATTCACTGA
ATACCGTCTTCTTTCTTGGTTGTGTACCCTGAATTCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49363.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis