Browse Element(s) Details


Os.49370.1.S1_x_at

Description gb:BI118799
DB_XREF= gi:14571431
DB_XREF=EST187
CLONE=HIBI-w2
TID=Os.49370.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49370 (NCBI UniGene Cluster)
UG_TITLE=Putative G-box binding protein mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g333905/11Cation-transporting ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49370.1.S1_x_at--94--2331Chr05:19527543..19527567 (25 bp)
AAAGTGATGGCCGTTCAGCTCCTAT
LOC_Os05g33390
Os.49370.1.S1_x_at--11--3691Chr05:19527421..19527445 (25 bp)
CTAGTCACTACCCTTCAAATGTTCA
LOC_Os05g33390
Os.49370.1.S1_x_at--1087--10491Chr05:19527400..19527424 (25 bp)
TTCAAGATTCTTGGGCTCAACTGCC
LOC_Os05g33390
Os.49370.1.S1_x_at--623--10691Chr05:19527375..19527399 (25 bp)
TTGCCACTGCATACGTTCTGAGTGT
LOC_Os05g33390
Os.49370.1.S1_x_at--1107--4711Chr05:19527329..19527353 (25 bp)
GCTGGGTGATGTTCAGGCTACTATC
LOC_Os05g33390
Os.49370.1.S1_x_at--223--2411NONE
AAACACTGTCTGCAGAGCGGGCTCA
NONE
Os.49370.1.S1_x_at--235--5891NONE
GAGCGGGCTCATCCAAACATATTCT
NONE
Os.49370.1.S1_x_at--664--2511NONE
AACATATTCTGGCATCCGTCTTCTT
NONE
Os.49370.1.S1_x_at--1019--551NONE
ATCCGTCTTCTTTCATTCTTGGGTC
NONE
Os.49370.1.S1_x_at--898--111NONE
ATTCTTGGGTCAGTTGGCATGCCCT
NONE
Os.49370.1.S1_x_at--231--611NONE
ATGCCCTTGTTCTTCTGATCTCAGC
NONE
Target Sequence 
AAAGTGATGGCCGTTCAGCTCCTATTGTGANGCTTGGGGATGCTTCCATGGCTTCACCTTTCACAGCAAAGCATGCCTCT
GTTGCCCCTACACTTGACATCATCCGCCAGGGGAGAAGCACCCTAGTCACTACCCTTCAAATGTTCAAGATTCTTGGGCT
CAACTGCCTTGCCACTGCATACGTTCTGAGTGTCATGTACTTGGATGGGGGTCAAGCTGGGTGATGTTCAGGCTACTATC
AGCGGGGTCTTCACTGCAGCTTTCTTCCTCTTTATTTCCCATGCTCGTCCCTTCAAACACTGTCTGCAGAGCGGGCTCAT
CCAAACATATTCTGGCATCCGTCTTCTTTCATTCTTGGGTCAGTTGGCATGCCCTTGTTCTTCTGATCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49370.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis