Browse Element(s) Details


Os.49392.1.S2_at

Description gb:AK106340.1
DB_XREF= gi:32991549
TID=Os.49392.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G08, full insert sequence.
FL= gb:AK106340.1 gb:AK109210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2360011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23580Os.38984.1.S1_s_at11/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580Os.38984.1.S1_at5/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23580OsAffx.22314.1.S1_x_at1/111+13219729..13228509Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os01g23590Os.16549.1.S1_at9/111+13237130..13244709expressed protein
LOC_Os01g23590Os.37090.1.S1_x_at1/111+13237130..13244709expressed protein
LOC_Os01g23600Os.49392.1.S2_at11/111+13247411..13249150expressed protein
LOC_Os01g23610Os.20630.1.S1_at9/111+13255095..13264539Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os01g23620Os.10984.1.S1_at11/111+13268584..13270947GTP-binding protein SAR1A, putative, expressed
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49392.1.S2_at--93--4311Chr01:13248551..13248575 (25 bp)
CCTTTCGCAGCCAGTTTGTGTTGAA
LOC_Os01g23600
Os.49392.1.S2_at--704--2511Chr01:13248604..13248628 (25 bp)
AACTCAGGAACTGCAGGTTGGGCCT
LOC_Os01g23600
Os.49392.1.S2_at--241--5971Chr01:13248643..13248667 (25 bp)
GAGAAACCTTTTCTGTTCTACAGAT
LOC_Os01g23600
Os.49392.1.S2_at--997--7831Chr01:13248733..13248757 (25 bp)
GGTACCTACCGATAATCGTCCATGT
LOC_Os01g23600
Os.49392.1.S2_at--1058--2212Chr05:4105023..4105046 (24 bp)
ACAAGATTGAGTTATGCACCGCTAA
NONE
Os.49392.1.S2_at--415--1171Chr01:13248918..13248942 (25 bp)
AGTAAAAACGTCCAGAGCCATCCTT
LOC_Os01g23600
Os.49392.1.S2_at--702--7851Chr01:13248993..13249017 (25 bp)
GGTAGACCACTTTCTGATCACAAAT
LOC_Os01g23600
Os.49392.1.S2_at--460--71Chr01:13249058..13249082 (25 bp)
ATTGCCGTGGCATATAGGTACTTCT
LOC_Os01g23600
Os.49392.1.S2_at--52--1031Chr01:13249073..13249097 (25 bp)
AGGTACTTCTAAGTGGCTCTGCTTT
LOC_Os01g23600
Os.49392.1.S2_at--732--7531Chr01:13249085..13249109 (25 bp)
GTGGCTCTGCTTTTAAAACATGCTA
LOC_Os01g23600
Os.49392.1.S2_at--717--831Chr01:13249115..13249140 (25 bp)
ATGGAGCCATCCTTGTATTATACTA
LOC_Os01g23600
Target Sequence 
CCTTTCGCAGCCAGTTTGTGTTGAAACTATTAGTAATCAATCTGTTATATGATAACTCAGGAACTGCAGGTTGGGCCTGA
ACTAAATTTTTTGAGAAACCTTTTCTGTTCTACAGATGGGATTCTAGAATCCATTGCTTACATGATAATGAAGGTTTGGT
GATTACCTGAAATTTGGAAGCAGGTACCTACCGATAATCGTCCATGTTATACTGTTAAATTTAAATGCATCCCTTGATAG
CAAAAAAAAAAAGAAAAAACTATACTGTTACTACAAGATTGAGTTATGCACCGCTAACAACAAATATGAGTCATTAGAGT
GAAAGAATGTTCTTAGACTAGAAGTTGTTTCAAGGGTGGAGATTGTTAGTAAAAACGTCCAGAGCCATCCTTCGGATAAT
TTATCCTTATTGATACTAAAAGTTGGATGATGTATTCACCTAGGTAGACCACTTTCTGATCACAAATTTTGCAAATGGAA
CTATGAATGTGCAGAAATTAGATCTAAATTGCCGTGGCATATAGGTACTTCTAAGTGGCTCTGCTTTTAAAACATGCTAC
GTGAATGGAGCCATCCTTGTATTATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49392.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis