Browse Element(s) Details


Os.49439.1.S1_at

Description gb:AK119396.1
DB_XREF= gi:37989019
TID=Os.49439.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-D09, full insert sequence.
FL= gb:AK119396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4604011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein
LOC_Os03g46060Os.12761.1.S1_at11/113+25987087..25987939P21 protein, putative, expressed
LOC_Os03g46070Os.459.1.S1_at10/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46070Os.6867.1.S1_x_at1/113+25988565..25989483P21 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49439.1.S1_at--538--5311Chr03:25976238..25976262 (25 bp)
GAAGGGTAATGACTCGGGCTCTAAA
LOC_Os03g46040
Os.49439.1.S1_at--484--1991Chr03:25976645..25976669 (25 bp)
ACTCCACTCTCAGCTAGATGGCAGA
LOC_Os03g46040
Os.49439.1.S1_at--445--5031Chr03:25976670..25976694 (25 bp)
GCAGTCACTTTAATTCTGAGCTCTC
LOC_Os03g46040
Os.49439.1.S1_at--835--8911Chr03:25976686..25976710 (25 bp)
TGAGCTCTCAGCTATTTGCCTATTT
LOC_Os03g46040
Os.49439.1.S1_at--974--10191Chr03:25976698..25976722 (25 bp)
TATTTGCCTATTTCTAACTGCGGAA
LOC_Os03g46040
Os.49439.1.S1_at--974--4991Chr03:25976765..25976789 (25 bp)
GCATGTGCATCCCTTACCAGAGGCA
LOC_Os03g46040
Os.49439.1.S1_at--1020--6191Chr03:25976784..25976808 (25 bp)
GAGGCACTCAGCTAGTAATTTGGTA
LOC_Os03g46040
Os.49439.1.S1_at--1086--4871Chr03:25976842..25976866 (25 bp)
GCTATTGTCGATTACTCAGCTAGTA
LOC_Os03g46040
Os.49439.1.S1_at--1043--9891Chr03:25976918..25976942 (25 bp)
TACTATGTACTAACACGCACGCTGT
LOC_Os03g46040
Os.49439.1.S1_at--507--10111Chr03:25976947..25976971 (25 bp)
TATGTACCTCTTGTGCGTGTTGTTA
LOC_Os03g46040
Os.49439.1.S1_at--1157--3311Chr03:25976981..25977005 (25 bp)
CACGTACGCTGTGAACTACCTTAAA
LOC_Os03g46040
Target Sequence 
GAAGGGTAATGACTCGGGCTCTAAAGTTGATGTTGAGGTTGGTGTATTTCATGTACGTAAATGTTCTAGAAGACTTGTCA
CTTTGACAGTAGAGTTGTCCGATGGTATTGAAGTCTTTCACTAANGCTCTCACCACTCCACTCTCAGCTAGATGGCAGAG
CAGTCACTTTAATTCTGAGCTCTCAGCTATTTGCCTATTTCTAACTGCGGAAACACATAACAGGGATACNTAGCAGGCAT
GGTTAATGTTTTGTGCATGTGCATCCCTTACCAGAGGCACTCAGCTAGTAATTTGGTACTCTAGATGGTAGATGATGCAA
ACTAGTTCTGAGCTATTGTCGATTACTCAGCTAGTAATTTGGTACTCGATGATGCAAACTAGTTCTGAGCTATTGTCGAT
AGTAATCTACTATGTACTAACACGCACGCTGTGAACTATGTACCTCTTGTGCGTGTTGTTAGAAAAAAAANCACGTACGC
TGTGAACTACCTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis